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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26040.1 CDX72943 AT1G72770.1 19407142
AT2G26040.1 CDX96432 AT1G72770.1 19407142
AT2G26040.1 CDY01017 AT3G11410.1 19407142
AT2G26040.1 CDY08530 AT3G11410.1 19407142
AT2G26040.1 CDY67227 AT3G11410.1 19407142
AT2G26040.1 CDY67257 AT3G11410.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007772.1-P Field mustard cytosol 97.34 97.34
CDY11503 Canola cytosol 97.34 97.34
AT2G26040.1 Thale cress cytosol 85.64 84.74
Solyc08g065410.1.1 Tomato cytosol 55.85 71.92
KRH61500 Soybean cytosol 70.21 69.84
KRH52194 Soybean cytosol 69.15 69.52
VIT_04s0008g00890.t01 Wine grape cytosol 67.02 68.11
Solyc12g095970.1.1 Tomato cytosol 68.62 67.89
PGSC0003DMT400075340 Potato cytosol 68.09 67.37
KRH05492 Soybean cytosol 66.49 66.49
PGSC0003DMT400077008 Potato cytosol 65.96 65.96
GSMUA_Achr7P09320_001 Banana cytosol 63.83 64.52
Zm00001d016294_P001 Maize cytosol 62.23 62.23
GSMUA_Achr10P... Banana cytosol 64.89 61.93
GSMUA_Achr6P00980_001 Banana cytosol 63.83 61.54
KRH15519 Soybean cytosol 68.62 61.43
EES06532 Sorghum cytosol 64.36 59.31
TraesCS3A01G154400.1 Wheat cytosol 61.7 58.88
TraesCS7D01G364600.1 Wheat cytosol 61.17 58.38
TraesCS3D01G161500.1 Wheat cytosol, nucleus, plastid 62.23 58.21
HORVU7Hr1G088140.2 Barley cytosol 60.64 58.16
TraesCS7B01G269600.1 Wheat cytosol 60.64 57.87
TraesCS7A01G358200.1 Wheat cytosol 60.11 57.65
EER88529 Sorghum cytosol 61.17 56.37
CDY70860 Canola cytosol 55.32 55.91
Os02t0226801-00 Rice cytosol 61.7 55.24
Os06t0562200-01 Rice cytosol 60.64 55.07
CDX82120 Canola plastid 59.04 54.15
CDY22516 Canola plastid 59.04 54.15
CDX90440 Canola cytosol 54.79 53.93
CDY69797 Canola cytosol 54.79 53.93
CDY01498 Canola cytosol 54.79 53.93
CDY48030 Canola plastid 58.51 53.66
HORVU3Hr1G030210.5 Barley plastid 32.98 53.45
HORVU4Hr1G060110.1 Barley mitochondrion 27.13 52.04
CDX76554 Canola cytosol 42.55 51.61
CDY08877 Canola cytosol 42.02 50.97
HORVU3Hr1G040680.1 Barley plastid 30.32 49.57
HORVU4Hr1G060100.1 Barley mitochondrion 25.53 48.98
CDY58505 Canola nucleus 53.19 47.62
CDX77691 Canola nucleus 53.19 46.51
CDX78879 Canola cytosol 40.43 45.78
CDY58019 Canola cytosol 40.43 45.78
CDX99450 Canola cytosol 40.43 45.78
CDY58053 Canola cytosol 38.83 45.06
CDY68675 Canola cytosol 38.83 45.06
CDY03194 Canola nucleus 45.74 45.03
CDY04951 Canola cytosol 45.74 43.65
CDY54415 Canola cytosol 47.34 43.63
CDY18391 Canola plastid 47.34 43.63
CDY68316 Canola nucleus 44.15 43.46
CDX91449 Canola plastid 47.34 43.0
CDY07739 Canola plastid 47.34 43.0
CDY14471 Canola plastid 47.34 43.0
CDY54453 Canola plastid 46.81 42.31
CDY25052 Canola cytosol 42.02 42.25
CDY70517 Canola cytosol 41.49 42.16
CDX93191 Canola cytosol 45.21 41.87
CDY38728 Canola cytosol 40.96 41.85
CDY49462 Canola cytosol 40.96 41.85
CDY61488 Canola cytosol 40.96 41.85
CDX89219 Canola cytosol 40.96 41.62
CDY64350 Canola cytosol 40.43 41.53
CDY27022 Canola cytosol 41.49 41.49
CDX96197 Canola cytosol 41.49 41.49
CDY52923 Canola cytosol 45.21 41.46
CDX70150 Canola cytosol 44.68 41.18
CDY53905 Canola cytosol 40.96 41.18
CDX98844 Canola cytosol 44.68 41.18
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 45.74 40.57
CDX74796 Canola cytosol, nucleus, plastid 45.21 40.09
CDX80959 Canola cytosol 43.09 39.9
CDY72318 Canola cytosol 43.09 39.9
CDY07608 Canola cytosol, mitochondrion 44.68 39.62
CDY24911 Canola cytosol, mitochondrion 43.62 38.5
CDX90028 Canola cytosol 38.3 38.3
CDY04688 Canola cytosol 37.77 38.17
CDY15183 Canola cytosol 37.77 37.97
CDX74368 Canola cytosol 38.83 37.82
CDX91871 Canola cytosol 38.83 37.82
CDY07165 Canola cytosol 9.57 30.0
HORVU3Hr1G107030.1 Barley mitochondrion 33.51 21.8
Protein Annotations
EnsemblPlants:CDX76731EnsemblPlantsGene:GSBRNA2T00127219001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF7PFAM:PF10604ProteinID:CDX76731ProteinID:CDX76731.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EDDB8DMapMan:11.1.2.1.1.1:::
Description
BnaC08g33170D
Coordinates
chrLK031808:+:741662..742353
Molecular Weight (calculated)
21033.8 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.325
Length
188 amino acids
Sequence
(BLAST)
001: MSSYPVVKGL TDEEHKTLEP VINTYHQFEP DPTTCTSLVA QRIDAPASIV WPLIRSFDNP QRYKHFVKSC RRVSGDGGVG SVREVTVISG IPASTSTERL
101: EFLDDNHRVL SFRVVGGEHR LNNYKSVTSV NEFLNQDPRR VYTVVLESYT VDVPEGNTVE DTRMFVDTVV KLNLQKLGVI ATAAPTHD
Best Arabidopsis Sequence Match ( AT2G26040.1 )
(BLAST)
001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
Arabidopsis Description
PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.