Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006608 | |
| PGSC0003DMT400043146 | |
| PGSC0003DMT400069947 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26040.1 | PGSC0003DMT400006608 | AT1G72770.1 | 19407142 |
| AT2G26040.1 | PGSC0003DMT400043146 | AT3G11410.1 | 19407142 |
| AT2G26040.1 | PGSC0003DMT400069947 | AT3G11410.1 | 19407142 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g095970.1.1 | Tomato | cytosol | 96.84 | 96.84 |
| PGSC0003DMT400077008 | Potato | cytosol | 84.21 | 85.11 |
| VIT_04s0008g00890.t01 | Wine grape | cytosol | 77.89 | 80.0 |
| KRH05492 | Soybean | cytosol | 70.0 | 70.74 |
| GSMUA_Achr7P09320_001 | Banana | cytosol | 68.95 | 70.43 |
| KRH61500 | Soybean | cytosol | 70.0 | 70.37 |
| KRH52194 | Soybean | cytosol | 68.95 | 70.05 |
| Bra007772.1-P | Field mustard | cytosol | 68.42 | 69.15 |
| CDY11503 | Canola | cytosol | 68.42 | 69.15 |
| AT2G26040.1 | Thale cress | cytosol | 68.95 | 68.95 |
| GSMUA_Achr6P00980_001 | Banana | cytosol | 70.53 | 68.72 |
| CDX76731 | Canola | cytosol | 67.37 | 68.09 |
| GSMUA_Achr10P... | Banana | cytosol | 70.53 | 68.02 |
| KRH15519 | Soybean | cytosol | 72.63 | 65.71 |
| Zm00001d016294_P001 | Maize | cytosol | 63.16 | 63.83 |
| EES06532 | Sorghum | cytosol | 64.21 | 59.8 |
| TraesCS7D01G364600.1 | Wheat | cytosol | 61.58 | 59.39 |
| TraesCS3A01G154400.1 | Wheat | cytosol | 61.58 | 59.39 |
| HORVU7Hr1G088140.2 | Barley | cytosol | 61.05 | 59.18 |
| TraesCS7A01G358200.1 | Wheat | cytosol | 60.53 | 58.67 |
| TraesCS7B01G269600.1 | Wheat | cytosol | 60.53 | 58.38 |
| TraesCS3D01G161500.1 | Wheat | cytosol, nucleus, plastid | 61.58 | 58.21 |
| EER88529 | Sorghum | cytosol | 61.05 | 56.86 |
| Os06t0562200-01 | Rice | cytosol | 61.05 | 56.04 |
| Os02t0226801-00 | Rice | cytosol | 61.58 | 55.71 |
| HORVU3Hr1G030210.5 | Barley | plastid | 33.16 | 54.31 |
| HORVU4Hr1G060110.1 | Barley | mitochondrion | 27.37 | 53.06 |
| HORVU4Hr1G060100.1 | Barley | mitochondrion | 27.37 | 53.06 |
| HORVU3Hr1G040680.1 | Barley | plastid | 30.53 | 50.43 |
| PGSC0003DMT400005378 | Potato | nucleus | 54.21 | 48.36 |
| PGSC0003DMT400023511 | Potato | cytosol | 46.32 | 47.57 |
| PGSC0003DMT400000606 | Potato | cytosol | 46.32 | 47.31 |
| PGSC0003DMT400028658 | Potato | nucleus | 51.58 | 46.01 |
| PGSC0003DMT400041080 | Potato | mitochondrion | 50.0 | 45.89 |
| PGSC0003DMT400045156 | Potato | nucleus | 55.26 | 45.45 |
| PGSC0003DMT400053102 | Potato | cytosol, plastid | 47.89 | 45.27 |
| PGSC0003DMT400053119 | Potato | cytosol, plastid | 47.89 | 45.27 |
| PGSC0003DMT400053120 | Potato | cytosol, plastid | 47.89 | 45.27 |
| PGSC0003DMT400012888 | Potato | cytosol | 42.11 | 45.2 |
| PGSC0003DMT400061535 | Potato | plastid | 51.05 | 44.5 |
| PGSC0003DMT400075056 | Potato | plastid | 49.47 | 43.93 |
| PGSC0003DMT400031686 | Potato | cytosol | 40.53 | 40.74 |
| PGSC0003DMT400069734 | Potato | mitochondrion, plastid | 43.68 | 39.9 |
| PGSC0003DMT400026521 | Potato | cytosol | 39.47 | 39.27 |
| HORVU3Hr1G107030.1 | Barley | mitochondrion | 35.26 | 23.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075340 | EnsemblPlantsGene:PGSC0003DMG400029300 | EntrezGene:102603461 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase |
| InterPro:START-like_dom_sf | PANTHER:PTHR31213 | PANTHER:PTHR31213:SF7 | PFAM:PF10604 | PGSC:PGSC0003DMG400029300 | RefSeq:XP_006342700.1 |
| SUPFAM:SSF55961 | UniParc:UPI000294FEDA | UniProt:M1CV00 | MapMan:11.1.2.1.1.1 | : | : |
Description
Bet v I allergen family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029300]
Coordinates
chr12:-:57787723..57789097
Molecular Weight (calculated)
21243.2 Da
IEP (calculated)
4.926
GRAVY (calculated)
-0.275
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGQLLVP QGLTQEEFAE LEPLIRNYHT FEDLPNTCTS LVTQRIDAPV DVVWPFVRRF DNPEKYKHFI KSCRIVSGDG GVGSIREVTV VSGIPASTST
101: ERLEILDDEK HILSFRVVGG EHRLTNYKSV TSVNEFSKNG KNYTIVLESY IVDIPEGNTG EDTKMFTDTV VKLNLQKLAL VAMSAMHGHE
101: ERLEILDDEK HILSFRVVGG EHRLTNYKSV TSVNEFSKNG KNYTIVLESY IVDIPEGNTG EDTKMFTDTV VKLNLQKLAL VAMSAMHGHE
001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
Arabidopsis Description
PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.