Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006608 | |
| PGSC0003DMT400043146 | |
| PGSC0003DMT400069947 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26040.1 | PGSC0003DMT400006608 | AT1G72770.1 | 19407142 |
| AT2G26040.1 | PGSC0003DMT400043146 | AT3G11410.1 | 19407142 |
| AT2G26040.1 | PGSC0003DMT400069947 | AT3G11410.1 | 19407142 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g065410.1.1 | Tomato | cytosol | 76.06 | 97.95 |
| PGSC0003DMT400075340 | Potato | cytosol | 85.11 | 84.21 |
| VIT_04s0008g00890.t01 | Wine grape | cytosol | 77.66 | 78.92 |
| KRH05492 | Soybean | cytosol | 73.4 | 73.4 |
| KRH61500 | Soybean | cytosol | 70.21 | 69.84 |
| KRH52194 | Soybean | cytosol | 69.15 | 69.52 |
| AT2G26040.1 | Thale cress | cytosol | 68.09 | 67.37 |
| GSMUA_Achr7P09320_001 | Banana | cytosol | 66.49 | 67.2 |
| KRH15519 | Soybean | cytosol | 75.0 | 67.14 |
| Bra007772.1-P | Field mustard | cytosol | 67.02 | 67.02 |
| CDY11503 | Canola | cytosol | 67.02 | 67.02 |
| CDX76731 | Canola | cytosol | 65.96 | 65.96 |
| GSMUA_Achr6P00980_001 | Banana | cytosol | 67.55 | 65.13 |
| GSMUA_Achr10P... | Banana | cytosol | 68.09 | 64.97 |
| Zm00001d016294_P001 | Maize | cytosol | 61.17 | 61.17 |
| TraesCS3A01G154400.1 | Wheat | cytosol | 59.57 | 56.85 |
| EES06532 | Sorghum | cytosol | 61.17 | 56.37 |
| TraesCS7D01G364600.1 | Wheat | cytosol | 58.51 | 55.84 |
| TraesCS7B01G269600.1 | Wheat | cytosol | 58.51 | 55.84 |
| TraesCS3D01G161500.1 | Wheat | cytosol, nucleus, plastid | 59.57 | 55.72 |
| HORVU7Hr1G088140.2 | Barley | cytosol | 57.98 | 55.61 |
| TraesCS7A01G358200.1 | Wheat | cytosol | 57.45 | 55.1 |
| EER88529 | Sorghum | cytosol | 57.98 | 53.43 |
| Os02t0226801-00 | Rice | cytosol | 59.04 | 52.86 |
| Os06t0562200-01 | Rice | cytosol | 57.98 | 52.66 |
| HORVU4Hr1G060110.1 | Barley | mitochondrion | 27.13 | 52.04 |
| HORVU3Hr1G030210.5 | Barley | plastid | 31.91 | 51.72 |
| HORVU4Hr1G060100.1 | Barley | mitochondrion | 26.06 | 50.0 |
| PGSC0003DMT400005378 | Potato | nucleus | 55.32 | 48.83 |
| HORVU3Hr1G040680.1 | Barley | plastid | 29.26 | 47.83 |
| PGSC0003DMT400023511 | Potato | cytosol | 45.21 | 45.95 |
| PGSC0003DMT400045156 | Potato | nucleus | 55.85 | 45.45 |
| PGSC0003DMT400012888 | Potato | cytosol | 42.55 | 45.2 |
| PGSC0003DMT400000606 | Potato | cytosol | 44.68 | 45.16 |
| PGSC0003DMT400053102 | Potato | cytosol, plastid | 47.87 | 44.78 |
| PGSC0003DMT400053119 | Potato | cytosol, plastid | 47.87 | 44.78 |
| PGSC0003DMT400053120 | Potato | cytosol, plastid | 47.87 | 44.78 |
| PGSC0003DMT400041080 | Potato | mitochondrion | 48.94 | 44.44 |
| PGSC0003DMT400028658 | Potato | nucleus | 50.0 | 44.13 |
| PGSC0003DMT400061535 | Potato | plastid | 51.06 | 44.04 |
| PGSC0003DMT400075056 | Potato | plastid | 47.87 | 42.06 |
| PGSC0003DMT400069734 | Potato | mitochondrion, plastid | 44.68 | 40.38 |
| PGSC0003DMT400031686 | Potato | cytosol | 40.43 | 40.21 |
| PGSC0003DMT400026521 | Potato | cytosol | 37.23 | 36.65 |
| HORVU3Hr1G107030.1 | Barley | mitochondrion | 34.04 | 22.15 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400077008 | EnsemblPlantsGene:PGSC0003DMG400029952 | EntrezGene:102594622 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase |
| InterPro:START-like_dom_sf | PANTHER:PTHR31213 | PANTHER:PTHR31213:SF7 | PFAM:PF10604 | PGSC:PGSC0003DMG400029952 | RefSeq:XP_006360983.1 |
| SUPFAM:SSF55961 | UniParc:UPI000296E5DD | UniProt:M1CXS6 | MapMan:11.1.2.1.1.1 | : | : |
Description
Bet v I allergen family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029952]
Coordinates
chr8:-:36289145..36290327
Molecular Weight (calculated)
21083.3 Da
IEP (calculated)
7.196
GRAVY (calculated)
-0.322
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTNCQVPQ GLKQEEFIEL EPLIRNYHTF EHLSNTCTSL ITQRIEAPAN VVWPFVRRFD NPQKYKHFIK SCKMTGDGGV GSIREVSVVS GIPASTSTER
101: LEILDDEKHI LSFRVVGGEH RLNNYKSVTS VNGFEKNGKA YTIVLESYIV DIPQGNTGED TKMFTDTVVK LNLQKLGVVA MAAMHGHE
101: LEILDDEKHI LSFRVVGGEH RLNNYKSVTS VNGFEKNGKA YTIVLESYIV DIPQGNTGED TKMFTDTVVK LNLQKLGVVA MAAMHGHE
001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
Arabidopsis Description
PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.