Factsheet for PGSC0003DMT400031686

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006608
PGSC0003DMT400046382

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01360.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT1G01360.1	PGSC0003DMT400006608	AT1G72770.1	19407143
AT1G01360.1	PGSC0003DMT400046382	AT4G26080.1	19407143
AT1G01360.1	PGSC0003DMT400046382	AT5G57050.1	19407143
AT4G01026.1	PGSC0003DMT400006608	AT1G72770.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082180.2.1	Tomato	cytosol	98.94	98.94
PGSC0003DMT400012888	Potato	cytosol	84.66	90.4
VIT_02s0025g01340.t01	Wine grape	cytosol	84.13	85.95
KRH47929	Soybean	cytosol	78.84	80.54
PGSC0003DMT400023511	Potato	cytosol	77.25	78.92
GSMUA_Achr10P...	Banana	cytosol	73.55	74.73
AT1G01360.1	Thale cress	cytosol	73.02	73.8
CDY04688	Canola	cytosol	72.49	73.66
HORVU0Hr1G032390.2	Barley	cytosol, extracellular	33.33	73.26
GSMUA_Achr10P...	Banana	cytosol	71.96	73.12
Bra033267.1-P	Field mustard	cytosol	71.96	73.12
CDY15183	Canola	cytosol	71.96	72.73
GSMUA_Achr2P19970_001	Banana	cytosol	71.43	72.58
CDX90028	Canola	cytosol	71.96	72.34
PGSC0003DMT400000606	Potato	cytosol	70.37	71.51
GSMUA_AchrUn_...	Banana	cytosol	69.31	70.43
CDY25052	Canola	cytosol	69.31	70.05
EES17886	Sorghum	cytosol	72.49	69.54
Bra003463.1-P	Field mustard	cytosol	68.78	69.52
CDY53905	Canola	cytosol	68.78	69.52
CDX74368	Canola	cytosol	70.9	69.43
TraesCS1B01G145800.1	Wheat	cytosol	75.13	69.27
Zm00001d037719_P001	Maize	cytosol	71.96	69.04
Bra000938.1-P	Field mustard	cytosol	70.37	68.91
TraesCS1D01G126900.1	Wheat	cytosol	74.6	68.78
TraesCS1A01G126800.1	Wheat	cytosol	74.6	68.78
Zm00001d010445_P001	Maize	cytosol	71.43	68.53
Os02t0255500-01	Rice	cytosol	73.55	68.14
Os05t0213500-01	Rice	cytosol, nucleus	75.13	67.94
CDX91871	Canola	cytosol	69.31	67.88
KRH06494	Soybean	cytosol, extracellular, vacuole	68.25	67.54
GSMUA_Achr3P03480_001	Banana	cytosol	73.02	66.99
EES04864	Sorghum	cytosol	73.55	65.88
Zm00001d016105_P001	Maize	cytosol	73.02	65.09
CDY07165	Canola	cytosol	20.63	65.0
GSMUA_Achr8P19910_001	Banana	mitochondrion	70.37	63.64
Zm00001d053396_P001	Maize	cytosol	71.43	62.21
Zm00001d002533_P001	Maize	cytosol	41.27	61.9
AT4G01026.1	Thale cress	cytosol	68.25	61.14
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	71.96	59.65
Os02t0255300-00	Rice	cytosol, plastid	54.5	57.22
Os06t0527800-01	Rice	cytosol	59.26	54.37
Os06t0528300-00	Rice	cytosol	58.73	53.88
TraesCS7B01G232100.1	Wheat	cytoskeleton, cytosol, nucleus	52.91	51.28
HORVU7Hr1G079270.1	Barley	cytosol	53.44	51.27
Os06t0526400-00	Rice	cytosol	52.91	51.02
TraesCS7D01G328000.1	Wheat	cytosol	52.91	50.76
TraesCS7A01G350800.1	Wheat	cytosol	51.32	49.24
HORVU1Hr1G030390.2	Barley	extracellular, mitochondrion, plasma membrane	74.6	48.45
HORVU3Hr1G054230.1	Barley	mitochondrion	38.1	45.28
PGSC0003DMT400053120	Potato	cytosol, plastid	47.62	44.78
PGSC0003DMT400053119	Potato	cytosol, plastid	47.62	44.78
PGSC0003DMT400053102	Potato	cytosol, plastid	47.62	44.78
PGSC0003DMT400041080	Potato	mitochondrion	46.03	42.03
PGSC0003DMT400069734	Potato	mitochondrion, plastid	46.03	41.83
PGSC0003DMT400028658	Potato	nucleus	46.03	40.85
PGSC0003DMT400075340	Potato	cytosol	40.74	40.53
PGSC0003DMT400077008	Potato	cytosol	40.21	40.43
PGSC0003DMT400061535	Potato	plastid	46.56	40.37
PGSC0003DMT400075056	Potato	plastid	44.97	39.72
PGSC0003DMT400005378	Potato	nucleus	43.92	38.97
PGSC0003DMT400026521	Potato	cytosol	39.15	38.74
PGSC0003DMT400045156	Potato	nucleus	43.92	35.93
Os06t0526466-00	Rice	cytosol, mitochondrion	21.69	29.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400031686	EnsemblPlantsGene:PGSC0003DMG400012155	EntrezGene:102591194	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF4	PFAM:PF10604	PGSC:PGSC0003DMG400012155	RefSeq:XP_006343869.1
SUPFAM:SSF55961	UniParc:UPI0002961D2C	UniProt:M1AW17	MapMan:11.1.2.1.1.1	:	:

Description

Pathogenesis-induced protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012155]

Coordinates

chr8:-:55782145..55786603

Molecular Weight (calculated)

21573.9 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.368

Length

189 amino acids

Sequence
(BLAST)

001: MVSIMNVDRK ISSEDEYIRR HHRHDVRDNQ CSSSLVKHIK APVHLVWSLV RRFDQPQRYK PFVSRCIVQG DLEIGSVREV NVKSGLPATT SKERLELLDD
101: DKHIFGVKIV GGDHRLRNYS SIITVHPEVI DGRPGTMVVE SFVVDVPDGN TKDETCYFVE ALIRCNLKSL ADVSERLAVQ GHMEPIDRM

Best Arabidopsis Sequence Match ( AT1G01360.1 )
(BLAST)

001: MMDGVEGGTA MYGGLETVQY VRTHHQHLCR ENQCTSALVK HIKAPLHLVW SLVRRFDQPQ KYKPFVSRCT VIGDPEIGSL REVNVKSGLP ATTSTERLEL
101: LDDEEHILGI KIIGGDHRLK NYSSILTVHP EIIEGRAGTM VIESFVVDVP QGNTKDETCY FVEALIRCNL KSLADVSERL ASQDITQ

Arabidopsis Description

PYL9RCAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4H4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.