Factsheet for PGSC0003DMT400005378

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005378
PGSC0003DMT400006608
PGSC0003DMT400043146
PGSC0003DMT400046382
PGSC0003DMT400049695
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT4G17870.1	PGSC0003DMT400006608	AT1G72770.1	19624469
AT4G17870.1	PGSC0003DMT400006608	AT1G72770.1	21847091
AT4G17870.1	PGSC0003DMT400043146	AT3G11410.1	19407142
AT4G17870.1	PGSC0003DMT400069947	AT3G11410.1	19407142
AT4G17870.1	PGSC0003DMT400005378	AT4G17870.1	21847091
AT4G17870.1	PGSC0003DMT400046382	AT4G26080.1	19407142
AT4G17870.1	PGSC0003DMT400046382	AT4G26080.1	19874541
AT4G17870.1	PGSC0003DMT400046382	AT5G57050.1	19407142
AT4G17870.1	PGSC0003DMT400049695	AT5G59220.1	19407142
AT5G46790.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT5G46790.1	PGSC0003DMT400006608	AT1G72770.1	21847091
AT5G46790.1	PGSC0003DMT400043146	AT3G11410.1	19407142
AT5G46790.1	PGSC0003DMT400069947	AT3G11410.1	19407142
AT5G46790.1	PGSC0003DMT400005378	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061180.1.1	Tomato	nucleus	92.96	92.96
AT4G17870.1	Thale cress	cytosol	64.32	71.73
CDY70860	Canola	cytosol	61.97	70.97
Bra012635.1-P	Field mustard	cytosol	63.38	70.68
CDX90440	Canola	cytosol	63.38	70.68
CDY01498	Canola	cytosol	63.38	70.68
CDY69797	Canola	cytosol	62.44	69.63
Bra013262.1-P	Field mustard	cytosol	61.5	68.59
CDY58505	Canola	nucleus	65.73	66.67
Bra024995.1-P	Field mustard	nucleus	65.26	66.19
KRH45453	Soybean	cytosol	65.73	66.04
KRH75621	Soybean	cytosol	65.73	65.42
PGSC0003DMT400045156	Potato	nucleus	70.89	65.37
CDX77691	Canola	nucleus	65.73	65.12
CDY08877	Canola	cytosol	46.95	64.52
CDX76554	Canola	cytosol	46.95	64.52
CDY03194	Canola	nucleus	57.75	64.4
Bra021032.1-P	Field mustard	cytosol	47.42	64.33
Bra017526.1-P	Field mustard	nucleus	54.46	63.39
CDY68316	Canola	nucleus	56.81	63.35
AT5G46790.1	Thale cress	nucleus	65.26	62.9
GSMUA_Achr4P19170_001	Banana	cytosol	53.05	58.25
GSMUA_Achr8P14780_001	Banana	cytosol	53.99	55.83
Zm00001d047037_P001	Maize	cytosol	53.52	55.61
PGSC0003DMT400077008	Potato	cytosol	48.83	55.32
Zm00001d030045_P001	Maize	cytosol	54.93	55.19
VIT_02s0012g01270.t01	Wine grape	cytosol	68.08	54.92
OQU92088	Sorghum	cytosol	54.46	54.72
Os10t0573400-01	Rice	plasma membrane	53.99	54.25
PGSC0003DMT400075340	Potato	cytosol	48.36	54.21
TraesCS1A01G191700.1	Wheat	cytosol	52.58	53.08
TraesCS1D01G195300.1	Wheat	cytosol	52.58	52.58
TraesCS1B01G206600.1	Wheat	cytosol, unclear	52.58	52.58
PGSC0003DMT400023511	Potato	cytosol	40.85	47.03
PGSC0003DMT400053120	Potato	cytosol, plastid	43.19	45.77
PGSC0003DMT400053119	Potato	cytosol, plastid	43.19	45.77
PGSC0003DMT400053102	Potato	cytosol, plastid	43.19	45.77
PGSC0003DMT400000606	Potato	cytosol	39.91	45.7
PGSC0003DMT400012888	Potato	cytosol	37.56	45.2
PGSC0003DMT400028658	Potato	nucleus	44.6	44.6
PGSC0003DMT400041080	Potato	mitochondrion	42.72	43.96
PGSC0003DMT400031686	Potato	cytosol	38.97	43.92
PGSC0003DMT400061535	Potato	plastid	44.13	43.12
PGSC0003DMT400075056	Potato	plastid	42.72	42.52
PGSC0003DMT400069734	Potato	mitochondrion, plastid	40.85	41.83
HORVU1Hr1G050110.1	Barley	plastid	52.58	40.88
PGSC0003DMT400026521	Potato	cytosol	33.8	37.7
VIT_04s0008g00270.t01	Wine grape	cytosol	29.58	21.72
VIT_08s0058g00230.t01	Wine grape	plastid	31.46	20.81
VIT_13s0175g00110.t01	Wine grape	plastid	7.98	16.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400005378	EnsemblPlantsGene:PGSC0003DMG400002100	EntrezGene:102580567	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	PGSC:PGSC0003DMG400002100	RefSeq:XP_006361188.1
SUPFAM:SSF55961	UniParc:UPI0002954CBE	UniProt:M0ZPT0	MapMan:11.1.2.1.1.1	:	:

Description

Abscisic acid receptor PYR1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002100]

Coordinates

chr6:+:44736847..44737898

Molecular Weight (calculated)

23717.6 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.395

Length

213 amino acids

Sequence
(BLAST)

001: MEQSDNSTTH VHQEAEEEPN PTHQFTLPPG FTPEESDELN SSITEFHSYR VDSSQCSSLL AQRIHAPPHV VWSVVRRFEK PQIYKHFIKS CSVGENFSMV
101: VGATRNVNVI SGLPANTSTE RLDLLDDEKY VTGFSIIGGE HRLTNYRSVT SVHGFERDGI IWTVVLESYI VDVPEGNTEE DTRLFADTVV KLNLQKLASV
201: AEAIARGGNG EIS

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.