Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G191700.1 | Wheat | cytosol | 99.06 | 100.0 |
| TraesCS1B01G206600.1 | Wheat | cytosol, unclear | 98.59 | 98.59 |
| OQU92088 | Sorghum | cytosol | 83.57 | 83.96 |
| Zm00001d030045_P001 | Maize | cytosol | 83.57 | 83.96 |
| Zm00001d047037_P001 | Maize | cytosol | 80.28 | 83.41 |
| Os10t0573400-01 | Rice | plasma membrane | 79.81 | 80.19 |
| HORVU1Hr1G050110.1 | Barley | plastid | 97.65 | 75.91 |
| GSMUA_Achr4P19170_001 | Banana | cytosol | 65.73 | 72.16 |
| GSMUA_Achr8P14780_001 | Banana | cytosol | 63.38 | 65.53 |
| CDY70860 | Canola | cytosol | 53.05 | 60.75 |
| CDX90440 | Canola | cytosol | 53.05 | 59.16 |
| CDY01498 | Canola | cytosol | 53.05 | 59.16 |
| Bra012635.1-P | Field mustard | cytosol | 53.05 | 59.16 |
| AT4G17870.1 | Thale cress | cytosol | 53.05 | 59.16 |
| Bra013262.1-P | Field mustard | cytosol | 52.58 | 58.64 |
| CDY69797 | Canola | cytosol | 52.58 | 58.64 |
| Bra021032.1-P | Field mustard | cytosol | 41.31 | 56.05 |
| KRH74424 | Soybean | cytosol | 57.75 | 55.66 |
| CDX76554 | Canola | cytosol | 40.38 | 55.48 |
| TraesCS7D01G364600.1 | Wheat | cytosol | 51.17 | 55.33 |
| KRH45453 | Soybean | cytosol | 54.93 | 55.19 |
| KRH75621 | Soybean | cytosol | 55.4 | 55.14 |
| CDY08877 | Canola | cytosol | 39.91 | 54.84 |
| Bra017526.1-P | Field mustard | nucleus | 46.95 | 54.64 |
| CDY03194 | Canola | nucleus | 48.83 | 54.45 |
| Solyc06g061180.1.1 | Tomato | nucleus | 53.99 | 53.99 |
| CDY68316 | Canola | nucleus | 48.36 | 53.93 |
| CDY58505 | Canola | nucleus | 53.05 | 53.81 |
| Bra024995.1-P | Field mustard | nucleus | 53.05 | 53.81 |
| AT5G46790.1 | Thale cress | nucleus | 55.4 | 53.39 |
| CDX77691 | Canola | nucleus | 53.52 | 53.02 |
| PGSC0003DMT400005378 | Potato | nucleus | 52.58 | 52.58 |
| TraesCS3D01G161500.1 | Wheat | cytosol, nucleus, plastid | 49.3 | 52.24 |
| Solyc08g076960.1.1 | Tomato | extracellular | 54.93 | 50.65 |
| PGSC0003DMT400045156 | Potato | nucleus | 54.46 | 50.22 |
| TraesCS1D01G293600.1 | Wheat | mitochondrion, plastid | 45.07 | 47.76 |
| TraesCS3D01G342000.1 | Wheat | plastid | 46.01 | 47.57 |
| KRH39536 | Soybean | plastid | 58.22 | 46.62 |
| VIT_02s0012g01270.t01 | Wine grape | cytosol | 56.81 | 45.83 |
| TraesCS2D01G087500.1 | Wheat | plastid | 44.6 | 44.39 |
| TraesCS4D01G191200.1 | Wheat | cytosol | 45.54 | 43.3 |
| TraesCS1D01G126900.1 | Wheat | cytosol | 35.21 | 36.59 |
| TraesCS7D01G328000.1 | Wheat | cytosol | 30.52 | 32.99 |
| VIT_04s0008g00270.t01 | Wine grape | cytosol | 26.29 | 19.31 |
| VIT_08s0058g00230.t01 | Wine grape | plastid | 28.17 | 18.63 |
| VIT_13s0175g00110.t01 | Wine grape | plastid | 5.63 | 11.32 |
Protein Annotations
| MapMan:11.1.2.1.1.1 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009738 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0042803 | GO:GO:1905183 | InterPro:IPR023393 | PFAM:PF10604 |
| PANTHER:PTHR31213 | PANTHER:PTHR31213:SF6 | InterPro:Polyketide_cyclase/dehydratase | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | EnsemblPlantsGene:TraesCS1D01G195300 |
| EnsemblPlants:TraesCS1D01G195300.1 | TIGR:cd07821 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:274254604..274255398
Molecular Weight (calculated)
22793.9 Da
IEP (calculated)
4.701
GRAVY (calculated)
-0.119
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQPVAAAA TEPEVPAGLG LTAAEYAQLL PTVEAYHRYA VGPGQCSSLV AQRIEAPPAA VWAIVRRFDC PQVYKHFIRS CALRPDPEAG DELRPGRLRE
101: VSVISGLPAS TSTERLDLLD DARRAFGFTI TGGEHRLRNY RSVTTVSELS PAAPAEICTV VLESYVVDVP DGNSEEDTRL FADTVVRLNL QKLKSVAEAN
201: AAAAAATPAP PAE
101: VSVISGLPAS TSTERLDLLD DARRAFGFTI TGGEHRLRNY RSVTTVSELS PAAPAEICTV VLESYVVDVP DGNSEEDTRL FADTVVRLNL QKLKSVAEAN
201: AAAAAATPAP PAE
001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R
Arabidopsis Description
PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.