Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045156 | Potato | nucleus | 92.64 | 92.64 |
| Solyc06g061180.1.1 | Tomato | nucleus | 64.07 | 69.48 |
| GSMUA_Achr4P19170_001 | Banana | cytosol | 50.65 | 60.31 |
| Solyc08g065410.1.1 | Tomato | cytosol | 37.66 | 59.59 |
| Zm00001d030045_P001 | Maize | cytosol | 53.25 | 58.02 |
| GSMUA_Achr8P14780_001 | Banana | cytosol | 51.52 | 57.77 |
| Zm00001d047037_P001 | Maize | cytosol | 50.65 | 57.07 |
| OQU92088 | Sorghum | cytosol | 51.95 | 56.6 |
| Solyc05g052420.1.1 | Tomato | cytosol | 19.91 | 56.1 |
| TraesCS1A01G191700.1 | Wheat | cytosol | 50.65 | 55.45 |
| Os10t0573400-01 | Rice | plasma membrane | 50.65 | 55.19 |
| TraesCS1D01G195300.1 | Wheat | cytosol | 50.65 | 54.93 |
| Solyc12g095970.1.1 | Tomato | cytosol | 45.02 | 54.74 |
| TraesCS1B01G206600.1 | Wheat | cytosol, unclear | 50.22 | 54.46 |
| Solyc09g015380.1.1 | Tomato | plastid | 42.86 | 49.25 |
| Solyc01g095700.2.1 | Tomato | cytosol | 38.96 | 48.39 |
| Solyc03g007310.2.1 | Tomato | cytosol | 38.1 | 47.57 |
| Solyc03g095780.1.1 | Tomato | plastid | 40.69 | 46.77 |
| Solyc10g085310.1.1 | Tomato | plastid | 42.86 | 46.48 |
| Solyc10g076410.1.1 | Tomato | plastid | 40.69 | 46.31 |
| Solyc12g055990.1.1 | Tomato | cytosol | 35.93 | 45.86 |
| Solyc08g082180.2.1 | Tomato | cytosol | 36.8 | 44.97 |
| HORVU1Hr1G050110.1 | Barley | plastid | 50.65 | 42.7 |
| Solyc02g076770.1.1 | Tomato | cytosol | 34.63 | 36.7 |
| Solyc06g050500.2.1 | Tomato | plastid | 41.13 | 34.55 |
Protein Annotations
| EnsemblPlants:Solyc08g076960.1.1 | EnsemblPlantsGene:Solyc08g076960.1 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase | InterPro:START-like_dom_sf |
| PANTHER:PTHR31213 | PANTHER:PTHR31213:SF6 | PDB:5MOA | PDB:5MOB | PFAM:PF10604 | SEG:seg |
| SUPFAM:SSF55961 | UniParc:UPI000276C0BD | UniProt:K4CN56 | MapMan:11.1.2.1.1.1 | : | : |
Description
No Description!
Coordinates
chr8:-:60902066..60902761
Molecular Weight (calculated)
25619.8 Da
IEP (calculated)
5.540
GRAVY (calculated)
-0.484
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNKPETSLD NPVHQRSEPG SETGSSLSTI TTHHLTVPPG LTPEEFQELS SSIAEFHSYR INPGQCSSLL AQRIHAPVET VWTVVRRFDK PQTYKHFIKS
101: CSVGEDFRMT VGSTRDVTVI SGLPAATSTE RLDILDDDRH VTGFSIIGGE HRLRNYRSVT TVHGFERDGE IWTVVLESYV VDVPEGNTEE DTRLFADTVV
201: KLNLQKLASV TETLAREAGN GSVNSRDASH R
101: CSVGEDFRMT VGSTRDVTVI SGLPAATSTE RLDILDDDRH VTGFSIIGGE HRLRNYRSVT TVHGFERDGE IWTVVLESYV VDVPEGNTEE DTRLFADTVV
201: KLNLQKLASV TETLAREAGN GSVNSRDASH R
001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T
Arabidopsis Description
PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.