Factsheet for Solyc10g076410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g070450.1.1
Solyc03g096670.2.1
Solyc05g052980.2.1
Solyc06g076400.2.1
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT2G38310.1	Solyc08g062650.2.1	AT1G72770.1	19624469
AT2G38310.1	Solyc03g096670.2.1	AT3G11410.1	19407142
AT2G38310.1	Solyc05g052980.2.1	AT3G11410.1	19407142
AT2G38310.1	Solyc02g070450.1.1	AT4G18340.1	19407142
AT2G38310.1	Solyc07g040990.2.1	AT4G26080.1	19407142
AT2G38310.1	Solyc06g076400.2.1	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041080	Potato	mitochondrion	92.12	90.34
Solyc09g015380.1.1	Tomato	plastid	70.94	71.64
Solyc10g085310.1.1	Tomato	plastid	73.89	70.42
KRH00319	Soybean	cytosol	59.11	67.8
KRH49452	Soybean	plastid	57.64	65.73
Solyc03g095780.1.1	Tomato	plastid	63.05	63.68
VIT_13s0067g01940.t01	Wine grape	plastid	65.02	62.26
KRH76014	Soybean	cytosol	65.02	61.11
Solyc05g052420.1.1	Tomato	cytosol	24.63	60.98
VIT_08s0058g00470.t01	Wine grape	plastid	67.0	59.91
Bra017125.1-P	Field mustard	plastid	60.1	59.8
CDY18391	Canola	plastid	60.1	59.8
CDY54415	Canola	cytosol	60.1	59.8
AT2G38310.1	Thale cress	plastid	60.59	59.42
Bra005115.1-P	Field mustard	plastid	43.35	59.06
CDY54453	Canola	plastid	60.1	58.65
CDX91449	Canola	plastid	59.61	58.45
Solyc08g065410.1.1	Tomato	cytosol	41.87	58.22
Bra000052.1-P	Field mustard	plastid	59.11	57.97
CDY07739	Canola	plastid	59.11	57.97
CDY14471	Canola	plastid	59.11	57.97
TraesCS4A01G114400.1	Wheat	cytosol	50.74	57.54
Zm00001d038436_P001	Maize	plastid	55.66	56.5
TraesCS1B01G306800.1	Wheat	mitochondrion	53.2	55.67
TraesCS3D01G342000.1	Wheat	plastid	56.16	55.34
GSMUA_Achr9P04600_001	Banana	cytosol	38.92	55.24
HORVU3Hr1G039010.1	Barley	plastid	55.66	54.85
HORVU3Hr1G088100.1	Barley	plastid	55.66	54.85
TraesCS3A01G348400.1	Wheat	plastid	55.66	54.85
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.66	54.59
GSMUA_Achr9P17980_001	Banana	cytosol	39.9	54.36
HORVU1Hr1G070420.1	Barley	mitochondrion	53.69	54.23
GSMUA_Achr6P32790_001	Banana	cytosol	56.16	54.03
TraesCS1A01G297600.1	Wheat	mitochondrion	53.2	53.73
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	53.2	53.73
TraesCS2D01G087500.1	Wheat	plastid	55.66	52.8
EES19683	Sorghum	plastid	56.16	52.78
TraesCS2B01G105300.1	Wheat	plastid	56.16	52.53
Os05t0473000-01	Rice	cytosol	55.66	52.07
GSMUA_AchrUn_...	Banana	plastid	40.39	51.9
GSMUA_Achr5P29490_001	Banana	plastid	41.38	51.85
HORVU4Hr1G055220.1	Barley	cytosol	55.66	50.45
TraesCS4B01G189800.1	Wheat	cytosol	55.17	50.0
Zm00001d047705_P001	Maize	plastid	53.69	50.0
Solyc03g007310.2.1	Tomato	cytosol	45.32	49.73
TraesCS4D01G191200.1	Wheat	cytosol	54.68	49.55
EER92405	Sorghum	plastid	54.19	49.55
Solyc12g095970.1.1	Tomato	cytosol	46.31	49.47
GSMUA_Achr11P...	Banana	cytosol, plastid	38.42	49.37
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	53.2	49.09
Os03t0297600-01	Rice	cytosol	55.17	48.91
Zm00001d043014_P001	Maize	cytosol	51.23	48.83
Solyc12g055990.1.1	Tomato	cytosol	43.35	48.62
Solyc06g050500.2.1	Tomato	plastid	65.02	48.0
GSMUA_Achr8P21220_001	Banana	cytosol	39.9	47.65
Solyc01g095700.2.1	Tomato	cytosol	42.86	46.77
Solyc08g082180.2.1	Tomato	cytosol	41.38	44.44
Solyc06g061180.1.1	Tomato	nucleus	44.83	42.72
Os01t0827800-00	Rice	plastid	53.69	42.58
GSMUA_Achr10P...	Banana	cytosol, plastid	41.38	42.42
Solyc08g076960.1.1	Tomato	extracellular	46.31	40.69
TraesCS2A01G089400.1	Wheat	plastid	56.16	39.86
Solyc02g076770.1.1	Tomato	cytosol	42.36	39.45
OQU87775	Sorghum	endoplasmic reticulum, extracellular	49.75	37.13
Zm00001d012475_P001	Maize	cytosol	51.72	33.65

Protein Annotations

EnsemblPlants:Solyc10g076410.1.1	EnsemblPlantsGene:Solyc10g076410.1	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
ncoils:Coil	PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI0002769D86
UniProt:K4D1Y3	MapMan:11.1.2.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr10:-:59389473..59390084

Molecular Weight (calculated)

22448.9 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.161

Length

203 amino acids

Sequence
(BLAST)

001: MIPNPQKSSI LLQRITSNNP CNCNKQSLHH HTPIPCTADI PDSVVKYHAH LVGPYQCCSA AIQRISAPVS TVWSVVRRFD NPQAYKHFIK SCHLIDGDGN
101: VGTLREVRVI SGLPAVNSTE RLEILDEERH VISFSVVGGD HRLANYKSVT TLHPEPFGNG TIVVESYVVD IPKGNTKDET CVFVDTIVKC NLLSLKQIAE
201: NLK

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.