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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g070450.1.1
Solyc03g096670.2.1
Solyc05g052980.2.1
Solyc06g076400.2.1
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38310.1 Solyc08g062650.2.1 AT1G72770.1 19407142
AT2G38310.1 Solyc08g062650.2.1 AT1G72770.1 19624469
AT2G38310.1 Solyc03g096670.2.1 AT3G11410.1 19407142
AT2G38310.1 Solyc05g052980.2.1 AT3G11410.1 19407142
AT2G38310.1 Solyc02g070450.1.1 AT4G18340.1 19407142
AT2G38310.1 Solyc07g040990.2.1 AT4G26080.1 19407142
AT2G38310.1 Solyc06g076400.2.1 AT5G59220.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400075056 Potato plastid 93.53 87.85
KRH00319 Soybean cytosol 62.69 71.19
Solyc10g076410.1.1 Tomato plastid 71.64 70.94
Solyc10g085310.1.1 Tomato plastid 74.13 69.95
KRH49452 Soybean plastid 61.19 69.1
Solyc03g095780.1.1 Tomato plastid 65.17 65.17
VIT_08s0058g00470.t01 Wine grape plastid 73.13 64.76
KRH76014 Soybean cytosol 68.66 63.89
VIT_13s0067g01940.t01 Wine grape plastid 66.17 62.74
Bra017125.1-P Field mustard plastid 62.19 61.27
CDY18391 Canola plastid 62.19 61.27
CDY54415 Canola cytosol 62.19 61.27
CDX91449 Canola plastid 62.69 60.87
Bra000052.1-P Field mustard plastid 62.19 60.39
CDY14471 Canola plastid 62.19 60.39
CDY07739 Canola plastid 62.19 60.39
AT2G38310.1 Thale cress plastid 62.19 60.39
Solyc05g052420.1.1 Tomato cytosol 24.38 59.76
Bra005115.1-P Field mustard plastid 44.28 59.73
CDY54453 Canola plastid 61.69 59.62
TraesCS4A01G114400.1 Wheat cytosol 52.24 58.66
GSMUA_Achr9P04600_001 Banana cytosol 40.8 57.34
Solyc08g065410.1.1 Tomato cytosol 40.8 56.16
Zm00001d038436_P001 Maize plastid 54.73 55.0
GSMUA_Achr6P32790_001 Banana cytosol 57.21 54.5
TraesCS1B01G306800.1 Wheat mitochondrion 52.24 54.12
TraesCS2D01G087500.1 Wheat plastid 56.72 53.27
TraesCS1A01G297600.1 Wheat mitochondrion 52.74 52.74
TraesCS2B01G105300.1 Wheat plastid 56.72 52.53
GSMUA_Achr5P29490_001 Banana plastid 42.29 52.47
HORVU1Hr1G070420.1 Barley mitochondrion 52.24 52.24
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 52.24 52.24
GSMUA_AchrUn_... Banana plastid 40.3 51.27
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 52.74 51.21
HORVU3Hr1G088100.1 Barley plastid 52.24 50.97
HORVU3Hr1G039010.1 Barley plastid 52.24 50.97
TraesCS3A01G348400.1 Wheat plastid 51.74 50.49
TraesCS3D01G342000.1 Wheat plastid 51.74 50.49
EES19683 Sorghum plastid 54.23 50.46
Zm00001d043014_P001 Maize cytosol 53.23 50.23
Os05t0473000-01 Rice cytosol 54.23 50.23
Zm00001d047705_P001 Maize plastid 53.73 49.54
Solyc12g095970.1.1 Tomato cytosol 46.77 49.47
GSMUA_Achr11P... Banana cytosol, plastid 38.81 49.37
Solyc06g050500.2.1 Tomato plastid 67.16 49.09
GSMUA_Achr9P17980_001 Banana cytosol 36.32 48.99
EER92405 Sorghum plastid 53.73 48.65
TraesCS4B01G189800.1 Wheat cytosol 53.73 48.21
TraesCS4D01G191200.1 Wheat cytosol 53.73 48.21
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 52.74 48.18
Solyc12g055990.1.1 Tomato cytosol 43.28 48.07
HORVU4Hr1G055220.1 Barley cytosol 53.23 47.77
Os03t0297600-01 Rice cytosol 54.23 47.6
Solyc03g007310.2.1 Tomato cytosol 41.79 45.41
Solyc01g095700.2.1 Tomato cytosol 41.79 45.16
GSMUA_Achr8P21220_001 Banana cytosol 37.81 44.71
Solyc08g082180.2.1 Tomato cytosol 41.79 44.44
Solyc06g061180.1.1 Tomato nucleus 45.77 43.19
Solyc08g076960.1.1 Tomato extracellular 49.25 42.86
GSMUA_Achr10P... Banana cytosol, plastid 41.29 41.92
Os01t0827800-00 Rice plastid 52.74 41.41
TraesCS2A01G089400.1 Wheat plastid 56.72 39.86
Solyc02g076770.1.1 Tomato cytosol 42.79 39.45
OQU87775 Sorghum endoplasmic reticulum, extracellular 51.24 37.87
Zm00001d012475_P001 Maize cytosol 51.24 33.01
Protein Annotations
EnsemblPlants:Solyc09g015380.1.1EnsemblPlantsGene:Solyc09g015380.1Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604SEG:segSUPFAM:SSF55961UniParc:UPI000276BD2B
UniProt:K4CS10MapMan:11.1.2.1.1.1::::
Description
No Description!
Coordinates
chr9:-:8710708..8711313
Molecular Weight (calculated)
22012.1 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.191
Length
201 amino acids
Sequence
(BLAST)
001: MPPKSSLLLQ RITTTTTSTS SKQRTPIPCT TQVPDSITSH HTHSVSPNQC CSAVIQRISA PISTVWSVLR RFDNPQAYKH FVKSCHVIGG DGKVGTVREV
101: RVISGLPAAN SMERLEILDE ERHVISFSVV GGDHRLVNYR SVTTLHSDQS SGTTIVVESY VVDIPHGNTT EETCVFVDTI VKCNLQSLAQ IVENSNTTNL
201: K
Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)
001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
Arabidopsis Description
PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.