CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88444
EER92493
EER96576
EES00964
EES01744
KXG22152
KXG22422
KXG22681
KXG33895
KXG35986
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	EES00964	AT1G72770.1	19407142
AT2G38310.1	KXG22422	AT1G72770.1	19407142
AT2G38310.1	KXG22681	AT1G72770.1	19407142
AT2G38310.1	OQU87413	AT1G72770.1	19407142
AT2G38310.1	EES00964	AT1G72770.1	19624469
AT2G38310.1	KXG22422	AT1G72770.1	19624469
AT2G38310.1	KXG22681	AT1G72770.1	19624469
AT2G38310.1	OQU87413	AT1G72770.1	19624469
AT2G38310.1	EER92493	AT3G11410.1	19407142
AT2G38310.1	EER96576	AT3G11410.1	19407142
AT2G38310.1	EES01744	AT3G11410.1	19407142
AT2G38310.1	KXG22152	AT3G11410.1	19407142
AT2G38310.1	KXG35986	AT3G11410.1	19407142
AT2G38310.1	EER88444	AT4G18340.1	19407142
AT2G38310.1	EER92493	AT5G59220.1	19407142
AT2G38310.1	EER96576	AT5G59220.1	19407142
AT2G38310.1	EES01744	AT5G59220.1	19407142
AT2G38310.1	KXG22152	AT5G59220.1	19407142
AT2G38310.1	KXG35986	AT5G59220.1	19407142
AT2G40330.1	EES00964	AT1G72770.1	19407142
AT2G40330.1	KXG22422	AT1G72770.1	19407142
AT2G40330.1	KXG22681	AT1G72770.1	19407142
AT2G40330.1	OQU87413	AT1G72770.1	19407142
AT2G40330.1	EES00964	AT1G72770.1	19624469
AT2G40330.1	KXG22422	AT1G72770.1	19624469
AT2G40330.1	KXG22681	AT1G72770.1	19624469
AT2G40330.1	OQU87413	AT1G72770.1	19624469
AT2G40330.1	KXG33895	AT2G20000.1	17944809
AT5G05440.1	EES00964	AT1G72770.1	19407142
AT5G05440.1	KXG22422	AT1G72770.1	19407142
AT5G05440.1	KXG22681	AT1G72770.1	19407142
AT5G05440.1	OQU87413	AT1G72770.1	19407142
AT5G05440.1	EES00964	AT1G72770.1	19624469
AT5G05440.1	KXG22422	AT1G72770.1	19624469
AT5G05440.1	KXG22681	AT1G72770.1	19624469
AT5G05440.1	OQU87413	AT1G72770.1	19624469

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043014_P001	Maize	cytosol	69.12	88.26
HORVU1Hr1G070420.1	Barley	mitochondrion	49.63	67.16
TraesCS1B01G306800.1	Wheat	mitochondrion	47.79	67.01
HORVU3Hr1G088100.1	Barley	plastid	50.74	66.99
HORVU3Hr1G039010.1	Barley	plastid	50.74	66.99
TraesCS3D01G342000.1	Wheat	plastid	50.74	66.99
TraesCS1A01G297600.1	Wheat	mitochondrion	49.26	66.67
Zm00001d012475_P001	Maize	cytosol	76.47	66.67
TraesCS3A01G348400.1	Wheat	plastid	50.37	66.5
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	48.53	65.67
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	49.63	65.22
EES19683	Sorghum	plastid	51.47	64.81
Os05t0473000-01	Rice	cytosol	50.74	63.59
Bra028758.1-P	Field mustard	cytosol	35.66	58.79
Solyc05g052420.1.1	Tomato	cytosol	17.65	58.54
KRH00319	Soybean	cytosol	37.5	57.63
KRH49452	Soybean	plastid	36.4	55.62
Os01t0827800-00	Rice	plastid	52.21	55.47
GSMUA_Achr11P...	Banana	cytosol, plastid	30.51	52.53
KRH73249	Soybean	plastid	39.71	51.92
PGSC0003DMT400053120	Potato	cytosol, plastid	38.24	51.74
PGSC0003DMT400053119	Potato	cytosol, plastid	38.24	51.74
PGSC0003DMT400053102	Potato	cytosol, plastid	38.24	51.74
CDX98844	Canola	cytosol	38.6	51.47
EER92405	Sorghum	plastid	41.91	51.35
CDY04951	Canola	cytosol	37.13	51.27
Solyc03g095780.1.1	Tomato	plastid	37.87	51.24
Solyc09g015380.1.1	Tomato	plastid	37.87	51.24
AT5G05440.1	Thale cress	cytosol	38.24	51.23
PGSC0003DMT400028658	Potato	nucleus	40.07	51.17
CDX70150	Canola	cytosol	38.24	50.98
Bra009113.1-P	Field mustard	cytosol	38.24	50.98
KRH76014	Soybean	cytosol	40.44	50.93
CDX93191	Canola	cytosol	37.87	50.74
Solyc10g085310.1.1	Tomato	plastid	39.71	50.7
PGSC0003DMT400061535	Potato	plastid	40.44	50.46
CDY52923	Canola	cytosol	37.87	50.24
Bra017012.1-P	Field mustard	cytosol	37.87	50.24
PGSC0003DMT400069734	Potato	mitochondrion, plastid	38.24	50.0
GSMUA_Achr5P29490_001	Banana	plastid	29.78	50.0
Bra017125.1-P	Field mustard	plastid	37.5	50.0
CDY54415	Canola	cytosol	37.5	50.0
CDY18391	Canola	plastid	37.5	50.0
CDX91449	Canola	plastid	37.87	49.76
Solyc10g076410.1.1	Tomato	plastid	37.13	49.75
CDX74796	Canola	cytosol, nucleus, plastid	38.6	49.53
PGSC0003DMT400041080	Potato	mitochondrion	37.5	49.28
Bra005853.1-P	Field mustard	cytosol	36.76	49.26
CDY72318	Canola	cytosol	36.76	49.26
Bra004967.1-P	Field mustard	mitochondrion	38.24	49.06
CDY54453	Canola	plastid	37.5	49.04
AT2G38310.1	Thale cress	plastid	37.13	48.79
CDX80959	Canola	cytosol	36.4	48.77
PGSC0003DMT400075056	Potato	plastid	38.24	48.6
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	37.87	48.58
AT2G40330.1	Thale cress	cytosol	38.24	48.37
CDY07739	Canola	plastid	36.76	48.31
CDY14471	Canola	plastid	36.76	48.31
Bra000052.1-P	Field mustard	plastid	36.76	48.31
VIT_13s0067g01940.t01	Wine grape	plastid	37.5	48.11
VIT_08s0058g00470.t01	Wine grape	plastid	40.07	48.02
KRH14908	Soybean	plastid	38.24	47.71
Bra005115.1-P	Field mustard	plastid	25.37	46.31
Bra000184.1-P	Field mustard	cytosol, mitochondrion	36.03	46.23
CDY07608	Canola	cytosol, mitochondrion	36.03	46.23
CDY24911	Canola	cytosol, mitochondrion	36.03	46.01
EES06532	Sorghum	cytosol	33.82	45.1
KRH31193	Soybean	cytosol, golgi, plastid	41.91	44.36
EER88529	Sorghum	cytosol	31.99	42.65
EES17886	Sorghum	cytosol	30.88	42.64
OQU92088	Sorghum	cytosol	32.72	41.98
Solyc06g050500.2.1	Tomato	plastid	40.81	40.36
EES04864	Sorghum	cytosol	30.51	39.34

Protein Annotations

EnsemblPlants:OQU87775	EnsemblPlantsGene:SORBI_3003G342000	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF21	PFAM:PF10604	ProteinID:OQU87775	ProteinID:OQU87775.1	SEG:seg
SignalP:SignalP-TM	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0009DC8ED8	UniProt:A0A1W0W084	MapMan:11.1.2.1.1.1

Description

hypothetical protein

Coordinates

chr3:+:66440296..66443480

Molecular Weight (calculated)

29455.8 Da

IEP (calculated)

7.243

GRAVY (calculated)

-0.191

Length

272 amino acids

Sequence
(BLAST)

001: HRSHIPNLLP VVFGVFLATA AAVVVTVRHT VSVATISIQG RTDDNSIDQE QARGSSSTMP YAAATRTSPE QHSRVVTNGR AAVACAGHAG VPAEVARHHE
101: HTVAAGQCCS VMMRSIAAPV DAVWSLVRRF DQPQGYKGFI RSCHLVDGDG IEVGSVRELE VVTGLPAQNS RERLEIRDDE RRVIGFRILG GDHRLANYRS
201: VTTVHEAASQ NGGGPLTMVV ESYVVDVPQG NTVEETHIFV DTIVRCNLQS LERTVLRQQA MAAAPHNNHN HN

Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)

001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS

Arabidopsis Description

PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.