CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX96432
CDY35917
CDY40468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40330.1	CDX72943	AT1G72770.1	19407142
AT2G40330.1	CDX96432	AT1G72770.1	19407142
AT2G40330.1	CDX72943	AT1G72770.1	19624469
AT2G40330.1	CDX96432	AT1G72770.1	19624469
AT2G40330.1	CDY35917	AT2G20000.1	17944809
AT2G40330.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004967.1-P	Field mustard	mitochondrion	96.7	96.7
CDX74796	Canola	cytosol, nucleus, plastid	96.23	96.23
CDY52923	Canola	cytosol	83.02	85.85
CDX93191	Canola	cytosol	82.08	85.71
AT2G40330.1	Thale cress	cytosol	85.38	84.19
CDY24911	Canola	cytosol, mitochondrion	82.08	81.69
CDY07608	Canola	cytosol, mitochondrion	81.6	81.6
Solyc05g052420.1.1	Tomato	cytosol	22.17	57.32
PGSC0003DMT400053102	Potato	cytosol, plastid	53.3	56.22
PGSC0003DMT400053119	Potato	cytosol, plastid	53.3	56.22
PGSC0003DMT400053120	Potato	cytosol, plastid	53.3	56.22
TraesCS4A01G114400.1	Wheat	cytosol	47.17	55.87
Solyc03g095780.1.1	Tomato	plastid	52.83	55.72
TraesCS1B01G306800.1	Wheat	mitochondrion	50.94	55.67
KRH73249	Soybean	plastid	53.3	54.33
HORVU1Hr1G070420.1	Barley	mitochondrion	51.42	54.23
TraesCS1A01G297600.1	Wheat	mitochondrion	51.42	54.23
CDY54415	Canola	cytosol	51.89	53.92
CDY18391	Canola	plastid	51.89	53.92
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	50.94	53.73
CDX91449	Canola	plastid	52.36	53.62
CDY14471	Canola	plastid	52.36	53.62
CDY07739	Canola	plastid	52.36	53.62
Zm00001d038436_P001	Maize	plastid	50.47	53.5
CDY54453	Canola	plastid	51.89	52.88
CDY68675	Canola	cytosol	40.09	52.47
CDY58053	Canola	cytosol	40.09	52.47
PGSC0003DMT400069734	Potato	mitochondrion, plastid	50.94	51.92
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	50.0	51.21
KRH14908	Soybean	plastid	52.36	50.92
PGSC0003DMT400061535	Potato	plastid	52.36	50.92
Zm00001d043014_P001	Maize	cytosol	50.94	50.7
Os05t0473000-01	Rice	cytosol	51.89	50.69
TraesCS3A01G348400.1	Wheat	plastid	49.06	50.49
GSMUA_Achr9P04600_001	Banana	cytosol	33.96	50.35
GSMUA_Achr6P32790_001	Banana	cytosol	50.0	50.24
TraesCS3D01G342000.1	Wheat	plastid	48.58	50.0
HORVU3Hr1G039010.1	Barley	plastid	48.58	50.0
HORVU3Hr1G088100.1	Barley	plastid	48.58	50.0
CDY72318	Canola	cytosol	47.64	49.75
CDX80959	Canola	cytosol	47.64	49.75
EES19683	Sorghum	plastid	50.47	49.54
CDX98844	Canola	cytosol	47.64	49.51
CDY04951	Canola	cytosol	45.75	49.24
CDX70150	Canola	cytosol	47.17	49.02
TraesCS2D01G087500.1	Wheat	plastid	49.06	48.6
TraesCS2B01G105300.1	Wheat	plastid	49.53	48.39
GSMUA_Achr9P17980_001	Banana	cytosol	33.49	47.65
CDY58019	Canola	cytosol	37.26	47.59
CDX99450	Canola	cytosol	37.26	47.59
CDX78879	Canola	cytosol	37.26	47.59
GSMUA_AchrUn_...	Banana	plastid	35.38	47.47
TraesCS4B01G189800.1	Wheat	cytosol	50.0	47.32
TraesCS4D01G191200.1	Wheat	cytosol	50.0	47.32
HORVU4Hr1G055220.1	Barley	cytosol	49.53	46.88
EER92405	Sorghum	plastid	49.06	46.85
Zm00001d047705_P001	Maize	plastid	48.11	46.79
CDY11503	Canola	cytosol	41.04	46.28
CDX76731	Canola	cytosol	40.57	45.74
GSMUA_Achr11P...	Banana	cytosol, plastid	33.96	45.57
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	47.17	45.45
Os03t0297600-01	Rice	cytosol	49.06	45.41
GSMUA_Achr5P29490_001	Banana	plastid	34.43	45.06
KRH31193	Soybean	cytosol, golgi, plastid	53.3	43.97
Os01t0827800-00	Rice	plastid	51.89	42.97
GSMUA_Achr8P21220_001	Banana	cytosol	34.43	42.94
CDY53905	Canola	cytosol	37.26	42.25
CDX89219	Canola	cytosol	36.79	42.16
CDX90028	Canola	cytosol	37.26	42.02
CDY15183	Canola	cytosol	36.79	41.71
CDY25052	Canola	cytosol	36.79	41.71
CDY04688	Canola	cytosol	36.32	41.4
CDY70860	Canola	cytosol	36.32	41.4
CDX90440	Canola	cytosol	37.26	41.36
CDY01498	Canola	cytosol	37.26	41.36
CDY69797	Canola	cytosol	36.79	40.84
Solyc06g050500.2.1	Tomato	plastid	52.83	40.73
CDY70517	Canola	cytosol	35.38	40.54
CDY49462	Canola	cytosol	34.91	40.22
CDY61488	Canola	cytosol	34.91	40.22
CDX96197	Canola	cytosol	35.38	39.89
CDY64350	Canola	cytosol	34.43	39.89
CDY38728	Canola	cytosol	34.43	39.67
CDY68316	Canola	nucleus	35.38	39.27
CDX74368	Canola	cytosol	35.38	38.86
CDY27022	Canola	cytosol	34.43	38.83
CDY03194	Canola	nucleus	34.91	38.74
GSMUA_Achr10P...	Banana	cytosol, plastid	35.85	38.38
CDX91871	Canola	cytosol	34.91	38.34
CDY58505	Canola	nucleus	37.74	38.1
CDY22516	Canola	plastid	36.79	38.05
CDY48030	Canola	plastid	36.79	38.05
CDX82120	Canola	plastid	36.79	38.05
OQU87775	Sorghum	endoplasmic reticulum, extracellular	48.58	37.87
CDX77691	Canola	nucleus	38.21	37.67
TraesCS2A01G089400.1	Wheat	plastid	49.06	36.36
CDY08877	Canola	cytosol	25.0	34.19
CDX76554	Canola	cytosol	25.0	34.19
Zm00001d012475_P001	Maize	cytosol	49.53	33.65
CDY07165	Canola	cytosol	8.96	31.67

Protein Annotations

EnsemblPlants:CDY18867	EnsemblPlantsGene:GSBRNA2T00006050001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	ProteinID:CDY18867	ProteinID:CDY18867.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0004EC2339	UniProt:A0A078G1L4	MapMan:11.1.2.1.1.1	:	:

Description

BnaC04g04830DBnaC04g04830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1L4]

Coordinates

chrLK032090:-:40651..41289

Molecular Weight (calculated)

23503.6 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.309

Length

212 amino acids

Sequence
(BLAST)

001: MPTSLQFQRS SSAAETSNAT VSSYHHHHKQ IHKVSLTRGM ADVPEHVEIF HTHVVSPSQC FSVVVQDVDA SASAVWSILS RFEHPQAYKH FVRSCHVAVG
101: DGREVGSVRE VRVVSGIPAT FSLERLEIMD DDRLVISFSV VGGDHRLQNY KSVTTVHECS STEDGKKRAR VVESYVVDVP AGNDKEETCS FADTIVRCNL
201: QSLAKLAENK RK

Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)

001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS

Arabidopsis Description

PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.