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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX77691
CDX96432
CDY01017
CDY03194
CDY08530
CDY58505
CDY67227
CDY67257
CDY68316

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46790.1 CDX72943 AT1G72770.1 19407142
AT5G46790.1 CDX96432 AT1G72770.1 19407142
AT5G46790.1 CDX72943 AT1G72770.1 21847091
AT5G46790.1 CDX96432 AT1G72770.1 21847091
AT5G46790.1 CDY01017 AT3G11410.1 19407142
AT5G46790.1 CDY08530 AT3G11410.1 19407142
AT5G46790.1 CDY67227 AT3G11410.1 19407142
AT5G46790.1 CDY67257 AT3G11410.1 19407142
AT5G46790.1 CDX77691 AT5G46790.1 21847091
AT5G46790.1 CDY03194 AT5G46790.1 21847091
AT5G46790.1 CDY58505 AT5G46790.1 21847091
AT5G46790.1 CDY68316 AT5G46790.1 21847091
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68316 Canola nucleus 96.86 96.86
Bra017526.1-P Field mustard nucleus 91.62 95.63
CDY58505 Canola nucleus 86.91 79.05
CDX77691 Canola nucleus 87.96 78.14
CDY70860 Canola cytosol 66.49 68.28
CDY69797 Canola cytosol 67.54 67.54
AT5G46790.1 Thale cress nucleus 76.44 66.06
CDY01498 Canola cytosol 64.92 64.92
CDX90440 Canola cytosol 64.4 64.4
CDY08877 Canola cytosol 48.69 60.0
CDX76554 Canola cytosol 48.17 59.35
Solyc06g061180.1.1 Tomato nucleus 64.92 58.22
PGSC0003DMT400005378 Potato nucleus 64.4 57.75
KRH45453 Soybean cytosol 63.87 57.55
KRH75621 Soybean cytosol 62.3 55.61
GSMUA_Achr4P19170_001 Banana cytosol 53.93 53.09
GSMUA_Achr8P14780_001 Banana cytosol 53.93 50.0
VIT_02s0012g01270.t01 Wine grape cytosol 68.59 49.62
Zm00001d047037_P001 Maize cytosol 52.88 49.27
Zm00001d030045_P001 Maize cytosol 54.45 49.06
TraesCS1D01G195300.1 Wheat cytosol 54.45 48.83
OQU92088 Sorghum cytosol 53.93 48.58
TraesCS1B01G206600.1 Wheat cytosol, unclear 53.93 48.36
TraesCS1A01G191700.1 Wheat cytosol 53.4 48.34
CDY11503 Canola cytosol 46.07 46.81
Os10t0573400-01 Rice plasma membrane 51.83 46.7
CDX76731 Canola cytosol 45.03 45.74
CDY68675 Canola cytosol 35.08 41.36
CDY58053 Canola cytosol 35.08 41.36
CDX82120 Canola plastid 43.46 40.49
CDY48030 Canola plastid 43.46 40.49
CDY22516 Canola plastid 43.46 40.49
CDY25052 Canola cytosol 38.22 39.04
CDY18391 Canola plastid 40.31 37.75
CDY54415 Canola cytosol 40.31 37.75
HORVU1Hr1G050110.1 Barley plastid 53.4 37.23
CDY04951 Canola cytosol 38.22 37.06
CDY54453 Canola plastid 40.31 37.02
CDY53905 Canola cytosol 36.13 36.9
CDX91449 Canola plastid 39.79 36.72
CDY07739 Canola plastid 39.27 36.23
CDY14471 Canola plastid 39.27 36.23
CDY49462 Canola cytosol 34.55 35.87
CDY61488 Canola cytosol 34.55 35.87
CDY58019 Canola cytosol 30.89 35.54
CDX78879 Canola cytosol 30.89 35.54
CDY64350 Canola cytosol 34.03 35.52
CDY72318 Canola cytosol 37.7 35.47
CDY38728 Canola cytosol 34.03 35.33
CDX98844 Canola cytosol 37.7 35.29
CDY70517 Canola cytosol 34.03 35.14
CDY07165 Canola cytosol 10.99 35.0
CDX80959 Canola cytosol 37.17 34.98
CDY04688 Canola cytosol 34.03 34.95
CDX99450 Canola cytosol 30.37 34.94
CDX74796 Canola cytosol, nucleus, plastid 38.74 34.91
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 38.74 34.91
CDX70150 Canola cytosol 37.17 34.8
CDX90028 Canola cytosol 34.03 34.57
CDX93191 Canola cytosol 36.65 34.48
CDY15183 Canola cytosol 33.51 34.22
CDY52923 Canola cytosol 36.65 34.15
CDX89219 Canola cytosol 32.98 34.05
CDX96197 Canola cytosol 32.98 33.51
CDX91871 Canola cytosol 33.51 33.16
CDX74368 Canola cytosol 33.51 33.16
CDY27022 Canola cytosol 31.94 32.45
CDY24911 Canola cytosol, mitochondrion 36.13 32.39
CDY07608 Canola cytosol, mitochondrion 35.6 32.08
VIT_04s0008g00270.t01 Wine grape cytosol 27.75 18.28
VIT_08s0058g00230.t01 Wine grape plastid 27.23 16.15
VIT_13s0175g00110.t01 Wine grape plastid 7.33 13.21
Protein Annotations
EnsemblPlants:CDY03194EnsemblPlantsGene:GSBRNA2T00115679001Gene3D:3.30.530.20InterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31213
PANTHER:PTHR31213:SF6ProteinID:CDY03194ProteinID:CDY03194.1SEG:segSUPFAM:SSF55961UniParc:UPI0004EDDC66
MapMan:11.1.2.1.1.1:::::
Description
BnaC09g19620D
Coordinates
chrLK031941:+:573947..575066
Molecular Weight (calculated)
21236.9 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.458
Length
191 amino acids
Sequence
(BLAST)
001: MVVSQPIREE EEATQTASTL HHQMIPSELT QDEFAELTDS ITEFHTYQLG PGRCSSLLAQ RIKSPPETVW SVMRVGCTRY VDVISGLPAN TSRERLDLLD
101: DDRRVTGFSI TGGEHRLRNY KSVTTVHGFE RDGRISSVVL ESYVVDVPEG NTEEDTRLFA DTVVKLNLQK LASVAEGMDP NPGDGRNSPV M
Best Arabidopsis Sequence Match ( AT1G73000.1 )
(BLAST)
001: MNLAPIHDPS SSSTTTTSSS TPYGLTKDEF STLDSIIRTH HTFPRSPNTC TSLIAHRVDA PAHAIWRFVR DFANPNKYKH FIKSCTIRVN GNGIKEIKVG
101: TIREVSVVSG LPASTSVEIL EVLDEEKRIL SFRVLGGEHR LNNYRSVTSV NEFVVLEKDK KKRVYSVVLE SYIVDIPQGN TEEDTRMFVD TVVKSNLQNL
201: AVISTASPT
Arabidopsis Description
PYL3RCAR13 [Source:UniProtKB/TrEMBL;Acc:A0A178W862]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.