Factsheet for Solyc06g061180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g070450.1.1
Solyc02g090390.2.1
Solyc03g096670.2.1
Solyc05g052980.2.1
Solyc06g061180.1.1
Solyc06g076400.2.1
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT4G17870.1	Solyc08g062650.2.1	AT1G72770.1	19624469
AT4G17870.1	Solyc08g062650.2.1	AT1G72770.1	21847091
AT4G17870.1	Solyc03g096670.2.1	AT3G11410.1	19407142
AT4G17870.1	Solyc05g052980.2.1	AT3G11410.1	19407142
AT4G17870.1	Solyc06g061180.1.1	AT4G17870.1	21847091
AT4G17870.1	Solyc02g070450.1.1	AT4G18340.1	19407142
AT4G17870.1	Solyc07g040990.2.1	AT4G26080.1	19407142
AT4G17870.1	Solyc07g040990.2.1	AT4G26080.1	19874541
AT4G17870.1	Solyc07g040990.2.1	AT5G57050.1	19407142
AT4G17870.1	Solyc06g076400.2.1	AT5G59220.1	19407142
AT4G17870.1	Solyc02g090390.2.1	AT5G66880.1	19874541
AT5G46790.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT5G46790.1	Solyc08g062650.2.1	AT1G72770.1	21847091
AT5G46790.1	Solyc03g096670.2.1	AT3G11410.1	19407142
AT5G46790.1	Solyc05g052980.2.1	AT3G11410.1	19407142
AT5G46790.1	Solyc06g061180.1.1	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005378	Potato	nucleus	92.96	92.96
AT4G17870.1	Thale cress	cytosol	64.32	71.73
CDY70860	Canola	cytosol	61.97	70.97
CDY69797	Canola	cytosol	62.91	70.16
CDY01498	Canola	cytosol	62.44	69.63
CDX90440	Canola	cytosol	62.44	69.63
Bra012635.1-P	Field mustard	cytosol	62.44	69.63
Bra013262.1-P	Field mustard	cytosol	61.5	68.59
KRH45453	Soybean	cytosol	67.14	67.45
CDY58505	Canola	nucleus	65.73	66.67
KRH75621	Soybean	cytosol	66.67	66.36
Bra024995.1-P	Field mustard	nucleus	65.26	66.19
CDX76554	Canola	cytosol	47.42	65.16
CDY08877	Canola	cytosol	47.42	65.16
CDX77691	Canola	nucleus	65.73	65.12
Bra021032.1-P	Field mustard	cytosol	47.89	64.97
CDY03194	Canola	nucleus	58.22	64.92
Solyc08g076960.1.1	Tomato	extracellular	69.48	64.07
Bra017526.1-P	Field mustard	nucleus	54.93	63.93
CDY68316	Canola	nucleus	57.28	63.87
AT5G46790.1	Thale cress	nucleus	65.26	62.9
Solyc08g065410.1.1	Tomato	cytosol	42.25	61.64
GSMUA_Achr4P19170_001	Banana	cytosol	54.93	60.31
Zm00001d047037_P001	Maize	cytosol	54.46	56.59
Zm00001d030045_P001	Maize	cytosol	55.87	56.13
OQU92088	Sorghum	cytosol	55.4	55.66
GSMUA_Achr8P14780_001	Banana	cytosol	53.52	55.34
Os10t0573400-01	Rice	plasma membrane	54.46	54.72
VIT_02s0012g01270.t01	Wine grape	cytosol	67.61	54.55
TraesCS1A01G191700.1	Wheat	cytosol	53.99	54.5
TraesCS1D01G195300.1	Wheat	cytosol	53.99	53.99
TraesCS1B01G206600.1	Wheat	cytosol, unclear	53.99	53.99
Solyc05g052420.1.1	Tomato	cytosol	20.66	53.66
Solyc12g095970.1.1	Tomato	cytosol	47.42	53.16
Solyc01g095700.2.1	Tomato	cytosol	40.38	46.24
Solyc03g007310.2.1	Tomato	cytosol	39.91	45.95
Solyc09g015380.1.1	Tomato	plastid	43.19	45.77
Solyc10g076410.1.1	Tomato	plastid	42.72	44.83
Solyc03g095780.1.1	Tomato	plastid	42.25	44.78
Solyc10g085310.1.1	Tomato	plastid	44.6	44.6
Solyc12g055990.1.1	Tomato	cytosol	37.56	44.2
Solyc08g082180.2.1	Tomato	cytosol	38.03	42.86
HORVU1Hr1G050110.1	Barley	plastid	53.99	41.97
Solyc06g050500.2.1	Tomato	plastid	44.6	34.55
Solyc02g076770.1.1	Tomato	cytosol	34.74	33.95
VIT_04s0008g00270.t01	Wine grape	cytosol	30.05	22.07
VIT_08s0058g00230.t01	Wine grape	plastid	31.92	21.12
VIT_13s0175g00110.t01	Wine grape	plastid	7.98	16.04

Protein Annotations

EnsemblPlants:Solyc06g061180.1.1	EnsemblPlantsGene:Solyc06g061180.1	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI0002766580	UniProt:K4C6U8
MapMan:11.1.2.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:39184053..39184694

Molecular Weight (calculated)

23730.8 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.388

Length

213 amino acids

Sequence
(BLAST)

001: MEQSDNSTTH VHQEAEEEPN PTHQFMLPPG LTPEESDELK SSVTDFHSYQ VNSSQCSSLL AQRIHAPPHV VWPVVRRFEK PQIYKHFIKS CSVAENFSMV
101: VGATRDVNVI SGLPANTSTE RLDLLDDEKY VTGFSIIGGE HRLKNYRSVT SVHGFERHGR IWTVVLESYV VDVPEGNTEE DTRLFADTVV KLNLQKLASV
201: AEAIALGGNG EIS

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.