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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002038.1-P
Bra016034.1-P
Bra017526.1-P
Bra024995.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46790.1 Bra016034.1-P AT1G72770.1 19407142
AT5G46790.1 Bra016034.1-P AT1G72770.1 21847091
AT5G46790.1 Bra002038.1-P AT3G11410.1 19407142
AT5G46790.1 Bra034845.1-P AT3G11410.1 19407142
AT5G46790.1 Bra017526.1-P AT5G46790.1 21847091
AT5G46790.1 Bra024995.1-P AT5G46790.1 21847091
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68316 Canola nucleus 98.91 94.76
CDY03194 Canola nucleus 95.63 91.62
Bra024995.1-P Field mustard nucleus 85.79 74.76
Bra013262.1-P Field mustard cytosol 66.12 63.35
AT5G46790.1 Thale cress nucleus 75.41 62.44
Bra012635.1-P Field mustard cytosol 63.93 61.26
Solyc06g061180.1.1 Tomato nucleus 63.93 54.93
Bra021032.1-P Field mustard cytosol 46.99 54.78
PGSC0003DMT400005378 Potato nucleus 63.39 54.46
KRH45453 Soybean cytosol 62.84 54.25
KRH75621 Soybean cytosol 60.66 51.87
GSMUA_Achr4P19170_001 Banana cytosol 53.01 50.0
GSMUA_Achr8P14780_001 Banana cytosol 54.1 48.06
Zm00001d047037_P001 Maize cytosol 53.01 47.32
Zm00001d030045_P001 Maize cytosol 54.64 47.17
TraesCS1D01G195300.1 Wheat cytosol 54.64 46.95
OQU92088 Sorghum cytosol 54.1 46.7
TraesCS1B01G206600.1 Wheat cytosol, unclear 54.1 46.48
TraesCS1A01G191700.1 Wheat cytosol 53.55 46.45
VIT_02s0012g01270.t01 Wine grape cytosol 66.67 46.21
Os10t0573400-01 Rice plasma membrane 51.91 44.81
Bra007772.1-P Field mustard cytosol 44.81 43.62
Bra028758.1-P Field mustard cytosol 38.8 43.03
Bra008064.1-P Field mustard plastid 43.17 38.54
Bra025048.1-P Field mustard cytosol 35.52 38.24
Bra017125.1-P Field mustard plastid 40.44 36.27
HORVU1Hr1G050110.1 Barley plastid 53.55 35.77
Bra005853.1-P Field mustard cytosol 39.34 35.47
Bra033267.1-P Field mustard cytosol 35.52 34.95
Bra009113.1-P Field mustard cytosol 38.8 34.8
Bra000052.1-P Field mustard plastid 39.34 34.78
Bra003463.1-P Field mustard cytosol 35.52 34.76
Bra013334.1-P Field mustard cytosol 30.6 33.73
Bra026299.1-P Field mustard cytosol 33.88 33.7
Bra029093.1-P Field mustard cytosol 33.88 33.7
Bra003077.1-P Field mustard cytosol 33.88 33.7
Bra017012.1-P Field mustard cytosol 37.16 33.17
Bra000938.1-P Field mustard cytosol 34.97 33.16
Bra004967.1-P Field mustard mitochondrion 38.25 33.02
Bra005115.1-P Field mustard plastid 26.78 32.89
Bra000184.1-P Field mustard cytosol, mitochondrion 36.61 31.6
Bra022634.1-P Field mustard cytosol 32.24 31.38
VIT_04s0008g00270.t01 Wine grape cytosol 25.68 16.21
VIT_08s0058g00230.t01 Wine grape plastid 26.23 14.91
VIT_13s0175g00110.t01 Wine grape plastid 7.65 13.21
Protein Annotations
EnsemblPlants:Bra017526.1EnsemblPlants:Bra017526.1-PEnsemblPlantsGene:Bra017526Gene3D:3.30.530.20InterPro:IPR023393InterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF6SEG:segSUPFAM:SSF55961UniParc:UPI000254244DUniProt:M4DLZ5
MapMan:11.1.2.1.1.1:::::
Description
AT4G17870 (E=1e-037) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA09:+:16092935..16093582
Molecular Weight (calculated)
20286.7 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.463
Length
183 amino acids
Sequence
(BLAST)
001: MVDSQPIRQE EEATQTASTL HHQMIPSELT PDEFAELTDS ITEFHTYQLG PGRCSSLLVQ RIKSPPETVW SVVDVISGLP ANTSRERLDL LDDDRRVTGF
101: SITGGEHRLR NYKSVTTVHG FEREGRISSV VLESYVVDVP AGNTEEDTRL FADTVVKLNL QKLASVAEGM DRNSGDGRNS PVM
Best Arabidopsis Sequence Match ( AT5G46790.1 )
(BLAST)
001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R
Arabidopsis Description
PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.