Factsheet for VIT_02s0012g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_06s0004g05460.t01
VIT_07s0197g00080.t01
VIT_08s0058g00230.t01
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01
VIT_13s0175g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19624469
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT4G17870.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT4G17870.1	VIT_02s0012g01270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_04s0008g00270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_08s0058g00230.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_13s0175g00110.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_06s0004g05460.t01	AT5G59220.1	19407142
AT4G17870.1	VIT_07s0197g00080.t01	AT5G66880.1	19874541
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT5G46790.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT5G46790.1	VIT_02s0012g01270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_04s0008g00270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_08s0058g00230.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_13s0175g00110.t01	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70860	Canola	cytosol	54.55	77.42
Bra012635.1-P	Field mustard	cytosol	55.68	76.96
CDY01498	Canola	cytosol	55.68	76.96
CDX90440	Canola	cytosol	55.68	76.96
Bra013262.1-P	Field mustard	cytosol	54.92	75.92
CDY69797	Canola	cytosol	54.92	75.92
AT4G17870.1	Thale cress	cytosol	54.17	74.87
CDX76554	Canola	cytosol	42.05	71.61
CDY08877	Canola	cytosol	42.05	71.61
CDY58505	Canola	nucleus	56.82	71.43
Bra021032.1-P	Field mustard	cytosol	42.42	71.34
CDX77691	Canola	nucleus	57.95	71.16
Bra024995.1-P	Field mustard	nucleus	56.44	70.95
CDY03194	Canola	nucleus	49.62	68.59
KRH45453	Soybean	cytosol	54.92	68.4
PGSC0003DMT400005378	Potato	nucleus	54.92	68.08
CDY68316	Canola	nucleus	49.24	68.06
Solyc06g061180.1.1	Tomato	nucleus	54.55	67.61
KRH75621	Soybean	cytosol	54.55	67.29
Bra017526.1-P	Field mustard	nucleus	46.21	66.67
AT5G46790.1	Thale cress	nucleus	55.68	66.52
GSMUA_Achr4P19170_001	Banana	cytosol	46.97	63.92
GSMUA_Achr8P14780_001	Banana	cytosol	48.11	61.65
Zm00001d047037_P001	Maize	cytosol	45.08	58.05
TraesCS1A01G191700.1	Wheat	cytosol	45.45	56.87
TraesCS1D01G195300.1	Wheat	cytosol	45.83	56.81
TraesCS1B01G206600.1	Wheat	cytosol, unclear	45.45	56.34
OQU92088	Sorghum	cytosol	44.7	55.66
Zm00001d030045_P001	Maize	cytosol	44.7	55.66
Os10t0573400-01	Rice	plasma membrane	44.32	55.19
VIT_04s0008g00890.t01	Wine grape	cytosol	37.88	54.05
VIT_13s0067g01940.t01	Wine grape	plastid	40.15	50.0
VIT_08s0058g00470.t01	Wine grape	plastid	41.67	48.46
VIT_16s0050g02620.t01	Wine grape	cytosol	33.33	47.57
VIT_02s0025g01340.t01	Wine grape	cytosol	31.06	44.32
VIT_15s0046g01050.t01	Wine grape	cytosol	32.2	44.27
HORVU1Hr1G050110.1	Barley	plastid	45.08	43.43
VIT_04s0008g00270.t01	Wine grape	cytosol	29.92	27.24
VIT_08s0058g00230.t01	Wine grape	plastid	29.55	24.22
VIT_13s0175g00110.t01	Wine grape	plastid	5.3	13.21

Protein Annotations

EntrezGene:100267793	wikigene:100267793	MapMan:11.1.2.1.1.1	Gene3D:3.30.530.20	EMBL:AM428936	ProteinID:CAN64657
ProteinID:CAN64657.1	ProteinID:CCB57904	ProteinID:CCB57904.1	UniProt:F6HT94	EMBL:FN596247	InterPro:IPR023393
EntrezGene:LOC100267793	wikigene:LOC100267793	PFAM:PF10604	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	InterPro:Polyketide_cyclase/dehydratase
SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI0002109E71	ArrayExpress:VIT_02s0012g01270	EnsemblPlantsGene:VIT_02s0012g01270	EnsemblPlants:VIT_02s0012g01270.t01
unigene:Vvi.24159	RefSeq:XP_002280361	RefSeq:XP_002280361.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:7370362..7372531

Molecular Weight (calculated)

29697.2 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.280

Length

264 amino acids

Sequence
(BLAST)

001: MNKAETSSMA EAESEDSETT TPTTHHLTIP PGLTQPEFQE LAHSISEFHT YQVGPGQCSS LLAQRVHAPL PTVWSVVRRF DKPQTYKHFI KSCHVEDGFE
101: MRVGCLRDVN VISGLPAETS TERLDILDDE RHVTGFSIIG GEHRLRNYRS VTTVHEYQNH GGEIWTVVLE SYVVDMPEGN TEEDTRLFAD TVVKLNLQKL
201: ASVTEGMARD QGCFYPLRCM ISRVCSMSLI KMITLDGILS SYFKLSEREA DFHVGCPTSC FIYA

Best Arabidopsis Sequence Match ( AT5G46790.1 )
(BLAST)

001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R

Arabidopsis Description

PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.