Factsheet for VIT_16s0050g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g01850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27920.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18155	Soybean	cytosol	89.73	86.91
KRH65845	Soybean	cytosol	90.27	86.53
Solyc03g007310.2.1	Tomato	cytosol	85.41	85.41
PGSC0003DMT400023511	Potato	cytosol	84.86	84.86
VIT_02s0025g01340.t01	Wine grape	cytosol	83.24	83.24
KRH53449	Soybean	cytosol	82.7	80.1
CDY49462	Canola	cytosol	79.46	79.89
Bra003077.1-P	Field mustard	cytosol	78.92	79.35
GSMUA_Achr10P...	Banana	cytosol	78.92	78.49
CDY61488	Canola	cytosol	77.84	78.26
AT5G53160.2	Thale cress	cytosol, nucleus, peroxisome	79.46	78.19
CDY38728	Canola	cytosol	77.3	77.72
CDY64350	Canola	cytosol	76.76	77.6
Bra029093.1-P	Field mustard	cytosol	76.76	77.17
CDX96197	Canola	cytosol	77.84	76.6
Bra022634.1-P	Field mustard	cytosol	76.76	75.53
GSMUA_Achr2P19970_001	Banana	cytosol	75.68	75.27
CDY27022	Canola	cytosol	76.22	75.0
GSMUA_Achr10P...	Banana	cytosol	74.05	73.66
GSMUA_AchrUn_...	Banana	cytosol	72.97	72.58
AT4G27920.1	Thale cress	cytosol	71.35	72.13
CDY70517	Canola	cytosol	71.35	71.35
Bra026299.1-P	Field mustard	cytosol	70.81	71.2
HORVU0Hr1G032390.2	Barley	cytosol, extracellular	32.97	70.93
CDX89219	Canola	cytosol	70.81	70.81
VIT_15s0046g01050.t01	Wine grape	cytosol	72.97	70.31
GSMUA_Achr3P03480_001	Banana	cytosol	76.76	68.93
Os02t0255500-01	Rice	cytosol	75.68	68.63
TraesCS1B01G145800.1	Wheat	cytosol	75.14	67.8
TraesCS1D01G126900.1	Wheat	cytosol	75.14	67.8
TraesCS1A01G126800.1	Wheat	cytosol	75.14	67.8
Zm00001d037719_P001	Maize	cytosol	71.89	67.51
EES17886	Sorghum	cytosol	71.35	67.01
Os05t0213500-01	Rice	cytosol, nucleus	75.68	66.99
Zm00001d016105_P001	Maize	cytosol	76.76	66.98
Zm00001d010445_P001	Maize	cytosol	70.81	66.5
EES04864	Sorghum	cytosol	74.59	65.4
KRH16733	Soybean	cytosol	36.22	63.81
GSMUA_Achr8P19910_001	Banana	mitochondrion	71.89	63.64
Zm00001d053396_P001	Maize	cytosol	74.05	63.13
KRH65286	Soybean	cytosol	30.27	61.54
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	75.68	61.4
Zm00001d002533_P001	Maize	cytosol	40.54	59.52
Os06t0528300-00	Rice	cytosol	61.08	54.85
Os02t0255300-00	Rice	cytosol, plastid	52.97	54.44
Os06t0527800-01	Rice	cytosol	60.54	54.37
TraesCS7B01G232100.1	Wheat	cytoskeleton, cytosol, nucleus	56.76	53.85
TraesCS7D01G328000.1	Wheat	cytosol	56.22	52.79
Os06t0526400-00	Rice	cytosol	55.68	52.55
HORVU7Hr1G079270.1	Barley	cytosol	55.68	52.28
TraesCS7A01G350800.1	Wheat	cytosol	54.05	50.76
HORVU1Hr1G030390.2	Barley	extracellular, mitochondrion, plasma membrane	75.14	47.77
VIT_04s0008g00890.t01	Wine grape	cytosol	45.95	45.95
HORVU3Hr1G054230.1	Barley	mitochondrion	37.3	43.4
VIT_13s0067g01940.t01	Wine grape	plastid	49.19	42.92
VIT_08s0058g00470.t01	Wine grape	plastid	51.35	41.85
VIT_02s0012g01270.t01	Wine grape	cytosol	47.57	33.33
Os06t0526466-00	Rice	cytosol, mitochondrion	24.86	33.33
VIT_04s0008g00270.t01	Wine grape	cytosol	29.19	18.62
VIT_08s0058g00230.t01	Wine grape	plastid	26.49	15.22
VIT_13s0175g00110.t01	Wine grape	plastid	5.95	10.38

Protein Annotations

EntrezGene:100251890	wikigene:100251890	MapMan:11.1.2.1.1.1	Gene3D:3.30.530.20	EMBL:AM429382	ProteinID:CAN64668
ProteinID:CAN64668.1	ProteinID:CBI22536	ProteinID:CBI22536.3	UniProt:E0CUI7	EMBL:FN595243	InterPro:IPR023393
EntrezGene:LOC100251890	wikigene:LOC100251890	PFAM:PF10604	PANTHER:PTHR31213	PANTHER:PTHR31213:SF12	InterPro:Polyketide_cyclase/dehydratase
SUPFAM:SSF55961	InterPro:START-like_dom_sf	TIGR:TC58057	TIGR:TC64310	UniParc:UPI00015CCD4B	ArrayExpress:VIT_16s0050g02620
EnsemblPlantsGene:VIT_16s0050g02620	EnsemblPlants:VIT_16s0050g02620.t01	unigene:Vvi.6929	RefSeq:XP_002270037	RefSeq:XP_002270037.2	RefSeq:XP_002270037.3

Description

No Description!

Coordinates

chr16:+:19636978..19641119

Molecular Weight (calculated)

20968.1 Da

IEP (calculated)

6.157

GRAVY (calculated)

-0.410

Length

185 amino acids

Sequence
(BLAST)

001: MNGNGLSSME SEYIRRHHRH EPAENQCSSA LVKHIKAPVP LVWSLVRRFD QPQKYKPFIS RCVVQGNLEI GSLREVDVKS GLPATTSTER LELLDDDEHI
101: LSMRIIGGDH RLRNYSSIIS LHPEIIDGRP GTMVIESYVV DVPEGNTKDE TCYFVEALIK CNLKSLADVS ERLAVQDRTE PIDRM

Best Arabidopsis Sequence Match ( AT5G53160.2 )
(BLAST)

001: MEANGIENLT NPNQEREFIR RHHKHELVDN QCSSTLVKHI NAPVHIVWSL VRRFDQPQKY KPFISRCVVK GNMEIGTVRE VDVKSGLPAT RSTERLELLD
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV

Arabidopsis Description

PYL8RCAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.