Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G328000.1 | Wheat | cytosol | 91.28 | 90.36 |
| TraesCS7A01G350800.1 | Wheat | cytosol | 89.23 | 88.32 |
| HORVU7Hr1G079270.1 | Barley | cytosol | 88.72 | 87.82 |
| Os06t0527800-01 | Rice | cytosol | 67.18 | 63.59 |
| Os06t0528300-00 | Rice | cytosol | 65.64 | 62.14 |
| Os06t0526400-00 | Rice | cytosol | 59.49 | 59.18 |
| GSMUA_Achr10P... | Banana | cytosol | 55.9 | 58.6 |
| Bra033267.1-P | Field mustard | cytosol | 54.87 | 57.53 |
| AT1G01360.1 | Thale cress | cytosol | 54.87 | 57.22 |
| KRH18155 | Soybean | cytosol | 55.9 | 57.07 |
| CDX90028 | Canola | cytosol | 54.87 | 56.91 |
| VIT_16s0050g02620.t01 | Wine grape | cytosol | 53.85 | 56.76 |
| KRH65845 | Soybean | cytosol | 55.9 | 56.48 |
| GSMUA_Achr10P... | Banana | cytosol | 53.85 | 56.45 |
| CDY04688 | Canola | cytosol | 53.85 | 56.45 |
| GSMUA_Achr4P08490_001 | Banana | cytosol | 57.44 | 56.28 |
| VIT_02s0025g01340.t01 | Wine grape | cytosol | 53.33 | 56.22 |
| KRH47929 | Soybean | cytosol | 53.33 | 56.22 |
| CDY49462 | Canola | cytosol | 52.82 | 55.98 |
| Bra003077.1-P | Field mustard | cytosol | 52.82 | 55.98 |
| PGSC0003DMT400012888 | Potato | cytosol | 50.77 | 55.93 |
| CDY15183 | Canola | cytosol | 53.33 | 55.62 |
| CDX96197 | Canola | cytosol | 53.33 | 55.32 |
| Solyc12g055990.1.1 | Tomato | cytosol | 51.28 | 55.25 |
| CDY64350 | Canola | cytosol | 51.79 | 55.19 |
| Solyc03g007310.2.1 | Tomato | cytosol | 52.31 | 55.14 |
| CDY61488 | Canola | cytosol | 51.79 | 54.89 |
| CDY38728 | Canola | cytosol | 51.79 | 54.89 |
| GSMUA_Achr2P19970_001 | Banana | cytosol | 52.31 | 54.84 |
| AT5G53160.2 | Thale cress | cytosol, nucleus, peroxisome | 52.82 | 54.79 |
| PGSC0003DMT400023511 | Potato | cytosol | 51.79 | 54.59 |
| KRH53449 | Soybean | cytosol | 53.33 | 54.45 |
| Bra029093.1-P | Field mustard | cytosol | 51.28 | 54.35 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.79 | 54.3 |
| Bra022634.1-P | Field mustard | cytosol | 51.79 | 53.72 |
| CDY27022 | Canola | cytosol | 51.28 | 53.19 |
| AT4G27920.1 | Thale cress | cytosol | 49.74 | 53.01 |
| Solyc08g082180.2.1 | Tomato | cytosol | 51.28 | 52.91 |
| PGSC0003DMT400031686 | Potato | cytosol | 51.28 | 52.91 |
| CDX74368 | Canola | cytosol | 52.31 | 52.85 |
| CDY25052 | Canola | cytosol | 50.26 | 52.41 |
| Bra000938.1-P | Field mustard | cytosol | 51.79 | 52.33 |
| Solyc01g095700.2.1 | Tomato | cytosol | 49.23 | 51.61 |
| PGSC0003DMT400000606 | Potato | cytosol | 49.23 | 51.61 |
| Bra003463.1-P | Field mustard | cytosol | 49.23 | 51.34 |
| CDY53905 | Canola | cytosol | 49.23 | 51.34 |
| TraesCS1B01G145800.1 | Wheat | cytosol | 53.85 | 51.22 |
| VIT_15s0046g01050.t01 | Wine grape | cytosol | 50.26 | 51.04 |
| GSMUA_Achr3P03480_001 | Banana | cytosol | 53.85 | 50.97 |
| CDX91871 | Canola | cytosol | 50.26 | 50.78 |
| KRH16733 | Soybean | cytosol | 26.67 | 49.52 |
| Bra026299.1-P | Field mustard | cytosol | 46.67 | 49.46 |
| KRH65286 | Soybean | cytosol | 23.08 | 49.45 |
| CDY70517 | Canola | cytosol | 46.67 | 49.19 |
| CDX89219 | Canola | cytosol | 46.67 | 49.19 |
| GSMUA_Achr8P19910_001 | Banana | mitochondrion | 51.79 | 48.33 |
| GSMUA_Achr4P15670_001 | Banana | cytosol | 44.62 | 46.52 |
| GSMUA_Achr2P15420_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 53.33 | 45.61 |
| KRH06494 | Soybean | cytosol, extracellular, vacuole | 44.62 | 45.55 |
| AT4G01026.1 | Thale cress | cytosol | 49.23 | 45.5 |
| CDY07165 | Canola | cytosol | 12.82 | 41.67 |
| Os06t0526466-00 | Rice | cytosol, mitochondrion | 27.18 | 38.41 |
| TraesCS7B01G269600.1 | Wheat | cytosol | 35.9 | 35.53 |
| TraesCS1B01G306800.1 | Wheat | mitochondrion | 34.87 | 35.05 |
| TraesCS3B01G380300.1 | Wheat | mitochondrion, plastid | 35.9 | 33.82 |
| TraesCS4B01G189800.1 | Wheat | cytosol | 36.41 | 31.7 |
| TraesCS2B01G105300.1 | Wheat | plastid | 34.87 | 31.34 |
| TraesCS1B01G206600.1 | Wheat | cytosol, unclear | 33.85 | 30.99 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G232100.1 | EnsemblPlantsGene:TraesCS7B01G232100 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase | InterPro:START-like_dom_sf |
| PANTHER:PTHR31213 | PANTHER:PTHR31213:SF16 | PFAM:PF10604 | SUPFAM:SSF55961 | TIGR:cd07821 | MapMan:11.1.2.1.1.1 |
Description
No Description!
Coordinates
chr7B:-:435112637..435118378
Molecular Weight (calculated)
22194.3 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.365
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSSGVGA DEIWRPWDEH TVLRPEEMEY VRQFHQHEPG ANQCTSFIAK HIKAPLQTVW SLVRRFDEPQ VFKPFVEKCV MQGNIEPGCV REVTIKSGLP
101: GTWSTERLEL LDDNEHILSV KFIDGDHPLK NYSSILTVHH EVIGGHPGAL VIESFVVDIP EENTENEIFY LVGNFIKINH NLLADVSERR NRALN
101: GTWSTERLEL LDDNEHILSV KFIDGDHPLK NYSSILTVHH EVIGGHPGAL VIESFVVDIP EENTENEIFY LVGNFIKINH NLLADVSERR NRALN
001: MEANGIENLT NPNQEREFIR RHHKHELVDN QCSSTLVKHI NAPVHIVWSL VRRFDQPQKY KPFISRCVVK GNMEIGTVRE VDVKSGLPAT RSTERLELLD
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV
Arabidopsis Description
PYL8RCAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN3]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.