Factsheet for Solyc12g055990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01360.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT1G01360.1	Solyc08g062650.2.1	AT1G72770.1	19407143
AT1G01360.1	Solyc07g040990.2.1	AT4G26080.1	19407143
AT1G01360.1	Solyc07g040990.2.1	AT5G57050.1	19407143
AT4G01026.1	Solyc08g062650.2.1	AT1G72770.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012888	Potato	cytosol	95.58	97.74
Solyc08g082180.2.1	Tomato	cytosol	87.85	84.13
VIT_02s0025g01340.t01	Wine grape	cytosol	83.98	82.16
KRH47929	Soybean	cytosol	80.11	78.38
Solyc03g007310.2.1	Tomato	cytosol	79.01	77.3
HORVU0Hr1G032390.2	Barley	cytosol, extracellular	35.36	74.42
GSMUA_Achr10P...	Banana	cytosol	74.59	72.58
GSMUA_Achr10P...	Banana	cytosol	74.59	72.58
AT1G01360.1	Thale cress	cytosol	74.59	72.19
Solyc01g095700.2.1	Tomato	cytosol	73.48	71.51
CDY04688	Canola	cytosol	71.82	69.89
Bra033267.1-P	Field mustard	cytosol	71.82	69.89
GSMUA_Achr2P19970_001	Banana	cytosol	71.82	69.89
CDY15183	Canola	cytosol	71.82	69.52
CDX90028	Canola	cytosol	71.82	69.15
CDY25052	Canola	cytosol	71.27	68.98
GSMUA_AchrUn_...	Banana	cytosol	70.72	68.82
Bra003463.1-P	Field mustard	cytosol	70.72	68.45
CDY53905	Canola	cytosol	70.17	67.91
KRH06494	Soybean	cytosol, extracellular, vacuole	70.72	67.02
EES17886	Sorghum	cytosol	72.93	67.01
CDX74368	Canola	cytosol	71.27	66.84
Zm00001d037719_P001	Maize	cytosol	72.38	66.5
Bra000938.1-P	Field mustard	cytosol	70.72	66.32
Zm00001d010445_P001	Maize	cytosol	71.82	65.99
TraesCS1D01G126900.1	Wheat	cytosol	74.59	65.85
TraesCS1B01G145800.1	Wheat	cytosol	74.59	65.85
TraesCS1A01G126800.1	Wheat	cytosol	74.59	65.85
CDX91871	Canola	cytosol	70.17	65.8
Os05t0213500-01	Rice	cytosol, nucleus	75.14	65.07
Os02t0255500-01	Rice	cytosol	72.38	64.22
GSMUA_Achr3P03480_001	Banana	cytosol	72.38	63.59
EES04864	Sorghum	cytosol	73.48	63.03
Zm00001d016105_P001	Maize	cytosol	73.48	62.74
GSMUA_Achr8P19910_001	Banana	mitochondrion	71.82	62.2
CDY07165	Canola	cytosol	20.44	61.67
Zm00001d053396_P001	Maize	cytosol	71.27	59.45
AT4G01026.1	Thale cress	cytosol	69.06	59.24
Zm00001d002533_P001	Maize	cytosol	40.88	58.73
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	71.27	56.58
Os02t0255300-00	Rice	cytosol, plastid	54.7	55.0
Os06t0527800-01	Rice	cytosol	61.33	53.88
Os06t0526400-00	Rice	cytosol	56.91	52.55
Os06t0528300-00	Rice	cytosol	59.12	51.94
TraesCS7B01G232100.1	Wheat	cytoskeleton, cytosol, nucleus	55.25	51.28
HORVU7Hr1G079270.1	Barley	cytosol	55.25	50.76
TraesCS7D01G328000.1	Wheat	cytosol	55.25	50.76
Solyc08g065410.1.1	Tomato	cytosol	40.33	50.0
TraesCS7A01G350800.1	Wheat	cytosol	54.14	49.75
HORVU1Hr1G030390.2	Barley	extracellular, mitochondrion, plasma membrane	74.59	46.39
Solyc05g052420.1.1	Tomato	cytosol	20.44	45.12
Solyc03g095780.1.1	Tomato	plastid	49.72	44.78
HORVU3Hr1G054230.1	Barley	mitochondrion	38.12	43.4
Solyc10g076410.1.1	Tomato	plastid	48.62	43.35
Solyc09g015380.1.1	Tomato	plastid	48.07	43.28
Solyc12g095970.1.1	Tomato	cytosol	43.09	41.05
Solyc10g085310.1.1	Tomato	plastid	47.51	40.38
Solyc06g061180.1.1	Tomato	nucleus	44.2	37.56
Solyc02g076770.1.1	Tomato	cytosol	43.65	36.24
Solyc08g076960.1.1	Tomato	extracellular	45.86	35.93
Solyc06g050500.2.1	Tomato	plastid	49.17	32.36
Os06t0526466-00	Rice	cytosol, mitochondrion	23.76	31.16

Protein Annotations

EnsemblPlants:Solyc12g055990.1.1	EnsemblPlantsGene:Solyc12g055990.1	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF4	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI0002769D2A	UniProt:K4DFT0
MapMan:11.1.2.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:61979048..61982980

Molecular Weight (calculated)

20669.7 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.331

Length

181 amino acids

Sequence
(BLAST)

001: MMNNMEDEYI RRHHRHVLDH NQCSSSLVKR IRAPVNLVWS LVRRFDQPQR YKPFVSRCVV QGDLEIGSVR EVNVRSGLPA TTSKERLELL DDEEHIFGVK
101: IVGGDHRLQN YSSIITVHPE VIDGRPGTIV IESFVVDIPD GNTKDETCFF VEALIRCNLK SLADVSERLA VQGHTDPIDR I

Best Arabidopsis Sequence Match ( AT1G01360.1 )
(BLAST)

001: MMDGVEGGTA MYGGLETVQY VRTHHQHLCR ENQCTSALVK HIKAPLHLVW SLVRRFDQPQ KYKPFVSRCT VIGDPEIGSL REVNVKSGLP ATTSTERLEL
101: LDDEEHILGI KIIGGDHRLK NYSSILTVHP EIIEGRAGTM VIESFVVDVP QGNTKDETCY FVEALIRCNL KSLADVSERL ASQDITQ

Arabidopsis Description

PYL9RCAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4H4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.