Factsheet for Solyc08g062650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g065820.1.1
Solyc02g076770.1.1
Solyc03g007310.2.1
Solyc03g095780.1.1
Solyc04g082760.2.1
Solyc05g021100.2.1
Solyc05g052420.1.1
Solyc06g050500.2.1
Solyc06g061180.1.1
Solyc08g065410.1.1
Solyc08g082180.2.1
Solyc09g015380.1.1
Solyc10g076410.1.1
Solyc10g085310.1.1
Solyc12g055990.1.1
Solyc12g095970.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72770.1	Solyc08g082180.2.1	AT1G01360.1	19407142
AT1G72770.1	Solyc12g055990.1.1	AT1G01360.1	19407142
AT1G72770.1	Solyc08g082180.2.1	AT1G01360.1	19407143
AT1G72770.1	Solyc12g055990.1.1	AT1G01360.1	19407143
AT1G72770.1	Solyc08g065410.1.1	AT2G26040.1	19407142
AT1G72770.1	Solyc12g095970.1.1	AT2G26040.1	19407142
AT1G72770.1	Solyc05g021100.2.1	AT2G30880.1	21798944
AT1G72770.1	Solyc04g082760.2.1	AT2G33610.1	19033529
AT1G72770.1	Solyc09g015380.1.1	AT2G38310.1	19407142
AT1G72770.1	Solyc10g076410.1.1	AT2G38310.1	19407142
AT1G72770.1	Solyc10g085310.1.1	AT2G38310.1	19407142
AT1G72770.1	Solyc09g015380.1.1	AT2G38310.1	19624469
AT1G72770.1	Solyc10g076410.1.1	AT2G38310.1	19624469
AT1G72770.1	Solyc10g085310.1.1	AT2G38310.1	19624469
AT1G72770.1	Solyc03g095780.1.1	AT2G40330.1	19407142
AT1G72770.1	Solyc05g052420.1.1	AT2G40330.1	19407142
AT1G72770.1	Solyc06g050500.2.1	AT2G40330.1	19407142
AT1G72770.1	Solyc03g095780.1.1	AT2G40330.1	19624469
AT1G72770.1	Solyc05g052420.1.1	AT2G40330.1	19624469
AT1G72770.1	Solyc06g050500.2.1	AT2G40330.1	19624469
AT1G72770.1	Solyc03g095780.1.1	AT2G40330.1	21847091
AT1G72770.1	Solyc05g052420.1.1	AT2G40330.1	21847091
AT1G72770.1	Solyc06g050500.2.1	AT2G40330.1	21847091
AT1G72770.1	Solyc08g082180.2.1	AT4G01026.1	19407142
AT1G72770.1	Solyc12g055990.1.1	AT4G01026.1	19407142
AT1G72770.1	Solyc06g061180.1.1	AT4G17870.1	19407142
AT1G72770.1	Solyc06g061180.1.1	AT4G17870.1	19624469
AT1G72770.1	Solyc06g061180.1.1	AT4G17870.1	21847091
AT1G72770.1	Solyc03g007310.2.1	AT4G27920.1	19407142
AT1G72770.1	Solyc02g076770.1.1	AT5G45860.1	19407142
AT1G72770.1	Solyc02g076770.1.1	AT5G45870.1	19407142
AT1G72770.1	Solyc06g061180.1.1	AT5G46790.1	19407142
AT1G72770.1	Solyc01g065820.1.1	AT5G66400.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G067360.1	Barley	cytosol, peroxisome	5.76	52.94
Solyc12g096020.1.1	Tomato	cytosol, nucleus, plastid	49.89	46.06
Os01t0583100-01	Rice	cytosol	36.89	43.69
Os05t0537400-00	Rice	cytosol	27.29	43.24
Zm00001d011131_P001	Maize	cytosol	25.59	42.55
GSMUA_Achr7P24000_001	Banana	cytosol	34.33	41.07
HORVU3Hr1G067380.4	Barley	cytosol	29.42	40.95
Bra016595.1-P	Field mustard	cytosol	35.61	40.73
Zm00001d039163_P002	Maize	cytosol	36.89	40.33
CDX96761	Canola	cytosol	30.06	40.29
TraesCS1D01G449700.1	Wheat	cytosol	34.75	39.76
TraesCS1A01G441200.1	Wheat	cytosol	34.75	39.56
KXG22681	Sorghum	cytosol	35.82	39.25
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	36.46	39.04
Zm00001d009747_P001	Maize	cytosol	34.75	38.53
CDX72943	Canola	cytosol, peroxisome, plastid	38.81	38.32
CDX83901	Canola	cytosol	28.57	38.29
HORVU1Hr1G094840.9	Barley	extracellular, mitochondrion	34.12	38.28
TraesCS3D01G249000.1	Wheat	cytosol	30.92	38.26
Zm00001d038846_P001	Maize	cytosol, nucleus	30.06	38.11
TraesCS3A01G249000.1	Wheat	cytosol	31.34	38.08
HORVU7Hr1G029040.1	Barley	cytosol, peroxisome	23.67	37.88
Os05t0592800-02	Rice	endoplasmic reticulum, vacuole	35.82	37.75
OQU87413	Sorghum	cytosol	30.7	37.6
TraesCS3A01G209200.1	Wheat	peroxisome, plasma membrane, vacuole	38.38	37.58
CDX96432	Canola	cytosol, peroxisome, plastid	38.59	37.4
Bra016034.1-P	Field mustard	cytosol, peroxisome, plastid	38.59	37.4
TraesCS3D01G212100.1	Wheat	peroxisome, plasma membrane, vacuole	37.95	37.4
TraesCS3B01G240000.1	Wheat	peroxisome, plasma membrane, vacuole	38.17	37.37
HORVU3Hr1G050340.1	Barley	plasma membrane, vacuole	37.95	37.32
GSMUA_Achr8P05700_001	Banana	cytosol, peroxisome, plasma membrane	34.54	37.16
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	43.28	37.04
Zm00001d044301_P001	Maize	cytosol, nucleus	38.17	36.98
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	37.95	36.93
KXG22422	Sorghum	cytosol, nucleus, plastid	29.64	36.58
TraesCS1B01G475700.1	Wheat	cytosol	34.54	36.4
TraesCS1A01G358600.1	Wheat	cytosol	29.42	36.32
TraesCS1B01G375100.1	Wheat	cytosol	29.42	36.22
TraesCS1D01G363500.1	Wheat	cytosol	29.21	35.86
HORVU1Hr1G080290.6	Barley	cytosol	29.21	35.68
TraesCS3B01G277900.1	Wheat	cytosol	31.34	35.25
CDY48313	Canola	cytosol	37.53	35.13
CDY26234	Canola	cytosol	37.1	35.08
AT1G72770.1	Thale cress	cytosol	38.17	35.03
PGSC0003DMT400006608	Potato	plastid	40.09	34.5
Bra025964.1-P	Field mustard	cytosol	37.31	34.45
AT1G17550.1	Thale cress	cytosol	37.53	34.44
TraesCS7A01G047900.1	Wheat	cytosol, mitochondrion, peroxisome	8.1	34.23
GSMUA_Achr3P26270_001	Banana	cytosol, peroxisome, plastid	33.69	31.85
Solyc05g052980.2.1	Tomato	nucleus	27.08	31.05
Solyc06g076400.2.1	Tomato	nucleus	26.65	30.49
Solyc03g096670.2.1	Tomato	nucleus	25.59	29.56
Solyc03g006940.1.1	Tomato	nucleus	21.54	29.28
Solyc07g040990.2.1	Tomato	cytosol	33.26	29.1
Solyc03g006930.1.1	Tomato	cytosol	20.04	28.4
Solyc03g006950.1.1	Tomato	cytosol, nucleus, peroxisome	20.04	27.09
Solyc03g006960.2.1	Tomato	nucleus	21.54	26.86
Solyc03g007230.2.1	Tomato	cytosol	22.6	26.7
Solyc08g082260.1.1	Tomato	nucleus	21.96	26.21
Solyc06g051940.2.1	Tomato	cytosol	23.67	25.11
Solyc06g082700.1.1	Tomato	cytosol, peroxisome, plastid	6.61	21.83
Solyc06g084100.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	10.66	18.8
Solyc08g062640.2.1	Tomato	cytosol	5.12	17.91
Zm00001d011132_P001	Maize	cytosol, nucleus	5.33	16.78
Solyc09g065650.2.1	Tomato	mitochondrion	10.45	5.25

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:11.1.2.1.1.2	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:K4CL52
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF374	SMART:SM00332	SUPFAM:SSF81606	EnsemblPlantsGene:Solyc08g062650.2
EnsemblPlants:Solyc08g062650.2.1	TMHMM:TMhelix	UniParc:UPI000276B2B0	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:51625581..51631339

Molecular Weight (calculated)

51641.5 Da

IEP (calculated)

4.656

GRAVY (calculated)

-0.057

Length

469 amino acids

Sequence
(BLAST)

001: MDDMCLAVAL PFRVESSVYD DCISVDSQKK QLTVTVPEET GMISENERNW IDVVRESEDD EILSLDGDQV LDSSCSLSVV SDSSSLCADD FISFELASEV
101: DGQNLVDAEK NICNVKLIAK AGDLVESGAQ ETESKPLAIG EKLDEQITDG SSSKSAEVVV QLPLDKGLNA AVGRSIFEVD YIPLWGFTSV CGRRPEMEDA
201: LATVPRFLRI PVQMLVGNRL PDGMTRYLSH LTAHFFGVYD GHGGSQVANY CRDRIHAVLA EELETIMANL NDESIRQNCQ DQWKNAFTNC FLKVDEEIGG
301: GGNREAVAPE TVGSTAVVAI VCSSHIIVAN CGDSRAVLCR GKEPMALSVD HKPNREDEYA RIEAAGGKVI QWNGHRVFGV LAMSRSIALI VATKSHTLIN
401: DLQFEPFFFL NHHLSDPGWF NCRTMTFHLL KIVSNNTKKS IQKMHGNIWH LLCFLIIPSL TLVSVTVRL

Best Arabidopsis Sequence Match ( AT1G72770.5 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GKHCFF

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.