Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G50980.1 | Thale cress | cytosol | 51.28 | 31.25 |
| VIT_04s0023g02480.t01 | Wine grape | cytosol | 48.72 | 29.23 |
| Bra036843.1-P | Field mustard | cytosol | 50.0 | 29.1 |
| CDX77969 | Canola | nucleus | 50.0 | 28.68 |
| CDY54976 | Canola | cytosol | 52.56 | 28.47 |
| CDY18597 | Canola | cytosol | 52.56 | 28.47 |
| CDX81402 | Canola | cytosol | 52.56 | 28.47 |
| CDX73764 | Canola | cytosol | 48.72 | 28.36 |
| Bra037177.1-P | Field mustard | cytosol | 51.28 | 27.78 |
| Solyc02g084840.2.1 | Tomato | cytosol | 52.56 | 26.11 |
| Os01t0702500-01 | Rice | cytosol, plastid | 56.41 | 23.4 |
| CDY65890 | Canola | cytosol | 52.56 | 21.69 |
| KXG33203 | Sorghum | nucleus | 57.69 | 21.63 |
| CDY55093 | Canola | cytosol | 52.56 | 21.58 |
| Bra031809.1-P | Field mustard | cytosol | 52.56 | 21.35 |
| TraesCS3B01G286600.1 | Wheat | cytosol | 57.69 | 20.74 |
| TraesCS3D01G255500.1 | Wheat | cytosol | 56.41 | 20.47 |
| AT5G66400.1 | Thale cress | cytosol | 47.44 | 19.89 |
| Zm00001d043730_P001 | Maize | cytosol | 55.13 | 18.22 |
| TraesCS3A01G254600.1 | Wheat | cytosol | 47.44 | 17.37 |
Protein Annotations
| MapMan:35.2 | InterPro:Dehydrin | InterPro:Dehydrin_CS | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009415 |
| GO:GO:0009628 | GO:GO:0009631 | GO:GO:0009719 | GO:GO:0009737 | UniProt:K4AWI5 | PFAM:PF00257 |
| ScanProsite:PS00823 | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF5 | EnsemblPlantsGene:Solyc01g065820.1 | EnsemblPlants:Solyc01g065820.1.1 | UniParc:UPI0002762753 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:72415677..72416466
Molecular Weight (calculated)
8871.6 Da
IEP (calculated)
10.620
GRAVY (calculated)
-1.636
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MKNILGVSED DGQGGRRKKK GLKEKIKEKF TGGKHKNEEP HHQAHGVGTR TTTTTTEHEK KSMMEKIKEK LPGHHNHH
001: MADLRDEKGN PIHLTDTQGN PIVDLTDEHG NPMYLTGVVS STPQHKESTT SDIAEHPTST VGETHPAAAP AGAGAATAAT ATGVSAGTGA TTTGQQHHGS
101: LEEHLRRSGS SSSSSSEDDG QGGRRKKSIK EKIKEKFGSG KHKDEQTPAT ATTTGPATTD QPHEKKGILE KIKDKLPGHH NHNHP
101: LEEHLRRSGS SSSSSSEDDG QGGRRKKSIK EKIKEKFGSG KHKDEQTPAT ATTTGPATTD QPHEKKGILE KIKDKLPGHH NHNHP
Arabidopsis Description
LEAProbable dehydrin LEA [Source:UniProtKB/Swiss-Prot;Acc:Q96261]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.