Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G286600.1 | Wheat | cytosol | 88.26 | 86.64 |
| TraesCS3D01G255500.1 | Wheat | cytosol | 71.36 | 70.7 |
| KXG33203 | Sorghum | nucleus | 54.93 | 56.25 |
| GSMUA_Achr4P11310_001 | Banana | nucleus | 22.07 | 48.96 |
| Solyc01g065820.1.1 | Tomato | nucleus | 17.37 | 47.44 |
| Zm00001d043730_P001 | Maize | cytosol | 49.3 | 44.49 |
| CDX81402 | Canola | cytosol | 29.58 | 43.75 |
| CDY18597 | Canola | cytosol | 29.58 | 43.75 |
| CDY54976 | Canola | cytosol | 29.58 | 43.75 |
| Bra037177.1-P | Field mustard | cytosol | 29.58 | 43.75 |
| PGSC0003DMT400009070 | Potato | cytosol | 31.46 | 42.68 |
| VIT_04s0023g02480.t01 | Wine grape | cytosol | 25.35 | 41.54 |
| Os01t0702500-01 | Rice | cytosol, plastid | 36.62 | 41.49 |
| AT3G50980.1 | Thale cress | cytosol | 23.94 | 39.84 |
| Bra036843.1-P | Field mustard | cytosol | 24.88 | 39.55 |
| CDX77969 | Canola | nucleus | 24.88 | 38.97 |
| CDX73764 | Canola | cytosol | 23.94 | 38.06 |
| CDY65890 | Canola | cytosol | 31.92 | 35.98 |
| CDY55093 | Canola | cytosol | 31.46 | 35.26 |
| Bra031809.1-P | Field mustard | cytosol | 31.46 | 34.9 |
| AT5G66400.1 | Thale cress | cytosol | 29.58 | 33.87 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G254600.1 | EnsemblPlantsGene:TraesCS3A01G254600 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 | GO:GO:0009628 |
| InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF5 | PFAM:PF00257 | ScanProsite:PS00315 |
| ScanProsite:PS00823 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:476564123..476564894
Molecular Weight (calculated)
21833.0 Da
IEP (calculated)
6.747
GRAVY (calculated)
-0.830
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYGGEYGH PYPRVDEYGN PVPPVDQYGN PIPREPGQVP AYTSGGAAPP YSSDGAGAVT SADYGAGVTP GYGLSGAVHP QESVVGGAVF PSGTAHTHEG
101: ALSGSLAPGE TTAYAYEGMV GSGIGTGDQI QPTKEGHTTL GETLRRSSSS SSSSSSEDDG QGGRQRKKKS MKAKIKEKLP GSHKQEEHKA GHTVPPAGTG
201: THEKIKEKLP GHH
101: ALSGSLAPGE TTAYAYEGMV GSGIGTGDQI QPTKEGHTTL GETLRRSSSS SSSSSSEDDG QGGRQRKKKS MKAKIKEKLP GSHKQEEHKA GHTVPPAGTG
201: THEKIKEKLP GHH
001: MESYQNQSGA QQTHQQLDQF GNPFPATTGA YGTAGGAPAV AEGGGLSGML HRSGSSSSSS SEDDGLGGRR RKKKGITEKI KEKLPGHHDS NKTSSLGSTT
101: TAYDTGTVHH EKKGMMEKIK EKLPGGHH
101: TAYDTGTVHH EKKGMMEKIK EKLPGGHH
Arabidopsis Description
XERO1Dehydrin Xero 1 [Source:UniProtKB/Swiss-Prot;Acc:P25863]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.