Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037177.1-P | Field mustard | cytosol | 62.5 | 41.67 |
| CDX81402 | Canola | cytosol | 62.5 | 41.67 |
| CDY18597 | Canola | cytosol | 62.5 | 41.67 |
| CDY54976 | Canola | cytosol | 62.5 | 41.67 |
| AT3G50980.1 | Thale cress | cytosol | 55.21 | 41.41 |
| Bra036843.1-P | Field mustard | cytosol | 56.25 | 40.3 |
| CDX73764 | Canola | cytosol | 56.25 | 40.3 |
| CDX77969 | Canola | nucleus | 56.25 | 39.71 |
| VIT_04s0023g02480.t01 | Wine grape | cytosol | 47.92 | 35.38 |
| Solyc02g084840.2.1 | Tomato | cytosol | 57.29 | 35.03 |
| PGSC0003DMT400009070 | Potato | cytosol | 57.29 | 35.03 |
| CDY65890 | Canola | cytosol | 61.46 | 31.22 |
| AT5G66400.1 | Thale cress | cytosol | 60.42 | 31.18 |
| CDY55093 | Canola | cytosol | 61.46 | 31.05 |
| Bra031809.1-P | Field mustard | cytosol | 61.46 | 30.73 |
| KXG33203 | Sorghum | nucleus | 63.54 | 29.33 |
| Os01t0702500-01 | Rice | cytosol, plastid | 57.29 | 29.26 |
| TraesCS3D01G255500.1 | Wheat | cytosol | 54.17 | 24.19 |
| TraesCS3B01G286600.1 | Wheat | cytosol | 54.17 | 23.96 |
| Zm00001d043730_P001 | Maize | cytosol | 58.33 | 23.73 |
| TraesCS3A01G254600.1 | Wheat | cytosol | 48.96 | 22.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P11310_001 | EnsemblPlants:GSMUA_Achr4T11310_001 | EnsemblPlantsGene:GSMUA_Achr4G11310_001 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PFAM:PF00257 | ScanProsite:PS00315 |
| ScanProsite:PS00823 | SEG:seg | UniParc:UPI000295F02E | UniProt:M0SMZ6 | MapMan:35.2 | : |
Description
Dehydrin Xero 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11310_001]
Coordinates
chr4:+:8106385..8106979
Molecular Weight (calculated)
10196.0 Da
IEP (calculated)
10.492
GRAVY (calculated)
-1.367
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MPATQGYGVG AGAAGKEQHH GGGGITGMLH RSGSSSSSSS EDDGQGGRRK KKGLKQKIKE KLPGGHKEHE SSVEKQHEKK GFVEKVKEKM PGHHKE
001: MESYQNQSGA QQTHQQLDQF GNPFPATTGA YGTAGGAPAV AEGGGLSGML HRSGSSSSSS SEDDGLGGRR RKKKGITEKI KEKLPGHHDS NKTSSLGSTT
101: TAYDTGTVHH EKKGMMEKIK EKLPGGHH
101: TAYDTGTVHH EKKGMMEKIK EKLPGGHH
Arabidopsis Description
XERO1Dehydrin Xero 1 [Source:UniProtKB/Swiss-Prot;Acc:P25863]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.