Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18597 | Canola | cytosol | 100.0 | 100.0 |
| CDX81402 | Canola | cytosol | 99.31 | 99.31 |
| Bra037177.1-P | Field mustard | cytosol | 98.61 | 98.61 |
| CDY65890 | Canola | cytosol | 96.53 | 73.55 |
| CDY55093 | Canola | cytosol | 93.75 | 71.05 |
| AT5G66400.1 | Thale cress | cytosol | 83.33 | 64.52 |
| GSMUA_Achr4P11310_001 | Banana | nucleus | 41.67 | 62.5 |
| CDX77969 | Canola | nucleus | 58.33 | 61.76 |
| CDX73764 | Canola | cytosol | 56.94 | 61.19 |
| Solyc01g065820.1.1 | Tomato | nucleus | 28.47 | 52.56 |
| PGSC0003DMT400009070 | Potato | cytosol | 53.47 | 49.04 |
| VIT_04s0023g02480.t01 | Wine grape | cytosol | 41.67 | 46.15 |
| KXG33203 | Sorghum | nucleus | 51.39 | 35.58 |
| Os01t0702500-01 | Rice | cytosol, plastid | 42.36 | 32.45 |
| TraesCS3D01G255500.1 | Wheat | cytosol | 46.53 | 31.16 |
| TraesCS3B01G286600.1 | Wheat | cytosol | 46.53 | 30.88 |
| TraesCS3A01G254600.1 | Wheat | cytosol | 43.75 | 29.58 |
| Zm00001d043730_P001 | Maize | cytosol | 47.22 | 28.81 |
Protein Annotations
| EnsemblPlants:CDY54976 | EnsemblPlantsGene:GSBRNA2T00014931001 | GO:A0A078IUD1 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PFAM:PF00257 | ProteinID:CDY18597.1 |
| ProteinID:CDY54976 | ProteinID:CDY54976.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg | UniParc:UPI0004EDAFC1 |
| UniProt:A0A078IUD1 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng27850DBnaA09g07980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUD1]
Coordinates
chrLK033366:+:42585..43600
Molecular Weight (calculated)
15071.4 Da
IEP (calculated)
8.850
GRAVY (calculated)
-1.349
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYQNRPGA QATDEYGNPI QQLDEYGNPI GRGATGGGGG RHHGQEQLHK ESGGGGLGGM LHRSGSGSSS SSEDDGQGGR RKKKGITDKI KEKLPGHHDQ
101: SGQSQGMGMG TTTGYDEGGY TGERHEKKGM MEKIKEKLPG GGHH
101: SGQSQGMGMG TTTGYDEGGY TGERHEKKGM MEKIKEKLPG GGHH
001: MASYQNRPGG QATDEYGNPI QQQYDEYGNP MGGGGYGTGG GGGATGGQGY GTGGQGYGSG GQGYGTGGQG YGTGTGTEGF GTGGGARHHG QEQLHKESGG
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
101: GLGGMLHRSG SGSSSSSEDD GQGGRRKKGI TQKIKEKLPG HHDQSGQAQA MGGMGSGYDA GGYGGEHHEK KGMMDKIKEK LPGGGR
Arabidopsis Description
RAB18RAB18 [Source:UniProtKB/TrEMBL;Acc:A0A178UN24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.