Factsheet for VIT_04s0023g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g065820.1.1	Tomato	nucleus	29.23	48.72
GSMUA_Achr4P11310_001	Banana	nucleus	35.38	47.92
AT3G50980.1	Thale cress	cytosol	44.62	45.31
Bra036843.1-P	Field mustard	cytosol	46.15	44.78
CDX77969	Canola	nucleus	46.15	44.12
CDX73764	Canola	cytosol	44.62	43.28
Bra037177.1-P	Field mustard	cytosol	46.15	41.67
CDX81402	Canola	cytosol	46.15	41.67
CDY18597	Canola	cytosol	46.15	41.67
CDY54976	Canola	cytosol	46.15	41.67
PGSC0003DMT400009070	Potato	cytosol	49.23	40.76
CDY65890	Canola	cytosol	50.77	34.92
CDY55093	Canola	cytosol	50.0	34.21
Bra031809.1-P	Field mustard	cytosol	50.0	33.85
AT5G66400.1	Thale cress	cytosol	46.92	32.8
KXG33203	Sorghum	nucleus	43.85	27.4
TraesCS3D01G255500.1	Wheat	cytosol	44.62	26.98
TraesCS3B01G286600.1	Wheat	cytosol	44.62	26.73
TraesCS3A01G254600.1	Wheat	cytosol	41.54	25.35
Os01t0702500-01	Rice	cytosol, plastid	36.15	25.0
Zm00001d043730_P001	Maize	cytosol	43.85	24.15

Protein Annotations

EntrezGene:100232959	wikigene:100232959	MapMan:35.2	ProteinID:AAV36560	ProteinID:AAV36560.1	ProteinID:AAW58106
ProteinID:AAW58106.1	ProteinID:AAW58107	ProteinID:AAW58107.1	ProteinID:ABN79587	ProteinID:ABN79587.1	ProteinID:ABN79618
ProteinID:ABN79618.1	ProteinID:AFD62287	ProteinID:AFD62287.1	ProteinID:AFD62288	ProteinID:AFD62288.1	ProteinID:AFG16886
ProteinID:AFG16886.1	ProteinID:AFG16887	ProteinID:AFG16887.1	ProteinID:AFG16888	ProteinID:AFG16888.1	ProteinID:AFG16889
ProteinID:AFG16889.1	ProteinID:AFG16890	ProteinID:AFG16890.1	ProteinID:AFG16891	ProteinID:AFG16891.1	ProteinID:AFG16892
ProteinID:AFG16892.1	ProteinID:AFG16893	ProteinID:AFG16893.1	ProteinID:AFG16894	ProteinID:AFG16894.1	ProteinID:AFG16904
ProteinID:AFG16904.1	ProteinID:AFG16905	ProteinID:AFG16905.1	ProteinID:AFG16906	ProteinID:AFG16906.1	ProteinID:AFG16907
ProteinID:AFG16907.1	ProteinID:AFG16908	ProteinID:AFG16908.1	ProteinID:AFG16909	ProteinID:AFG16909.1	ProteinID:AFG16910
ProteinID:AFG16910.1	EMBL:AM486091	EMBL:AY634281	EMBL:AY706989	EMBL:AY706990	ProteinID:CAN84076
ProteinID:CAN84076.1	ProteinID:CBI17454	ProteinID:CBI17454.3	InterPro:Dehydrin	InterPro:Dehydrin_CS	EMBL:EF371881
EMBL:EF371882	EMBL:FN594959	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009415	GO:GO:0009628
GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	EMBL:JF896528	EMBL:JF896529	EMBL:JF896530
EMBL:JF896531	EMBL:JF896532	EMBL:JF896533	EMBL:JF896534	EMBL:JF896535	EMBL:JF896536
EMBL:JF896546	EMBL:JF896547	EMBL:JF896548	EMBL:JF896549	EMBL:JF896550	EMBL:JF896551
EMBL:JF896552	EMBL:JN689936	EMBL:JN689937	EntrezGene:LOC100232959	wikigene:LOC100232959	PFAM:PF00257
ScanProsite:PS00823	PANTHER:PTHR33346	UniProt:Q3ZNL4	TIGR:TC54112	TIGR:TC61998	UniParc:UPI00005A9EBB
ArrayExpress:VIT_04s0023g02480	EnsemblPlantsGene:VIT_04s0023g02480	EnsemblPlants:VIT_04s0023g02480.t01	SEG:seg	:	:

Description

Dehydrin 1 [Source:UniProtKB/TrEMBL;Acc:Q3ZNL4]

Coordinates

chr4:+:19034554..19035405

Molecular Weight (calculated)

13918.2 Da

IEP (calculated)

9.802

GRAVY (calculated)

-1.459

Length

130 amino acids

Sequence
(BLAST)

001: MAYQQDPCAN PTHQTGKTGG QTDQYGNPVH QTEAMGAYGA GTGTGMHGGE HQQQPHQQPG VLHRSGSSSS EDDGQGGRRK KGMKEKIKER IPGMGRKDEQ
101: KHTSATSTPG QGQQQKGMME KIKEKLPGGH

Best Arabidopsis Sequence Match ( AT3G50980.1 )
(BLAST)

001: MESYQNQSGA QQTHQQLDQF GNPFPATTGA YGTAGGAPAV AEGGGLSGML HRSGSSSSSS SEDDGLGGRR RKKKGITEKI KEKLPGHHDS NKTSSLGSTT
101: TAYDTGTVHH EKKGMMEKIK EKLPGGHH

Arabidopsis Description

XERO1Dehydrin Xero 1 [Source:UniProtKB/Swiss-Prot;Acc:P25863]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.