Factsheet for Solyc04g082760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096670.2.1
Solyc04g082760.2.1
Solyc05g052980.2.1
Solyc06g060120.2.1
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	Solyc06g060120.2.1	AT1G21700.1	12140326
AT2G33610.1	Solyc06g060120.2.1	AT1G21700.1	16845477
AT2G33610.1	Solyc08g062650.2.1	AT1G72770.1	19033529
AT2G33610.1	Solyc04g082760.2.1	AT2G33610.1	12140326
AT2G33610.1	Solyc04g082760.2.1	AT2G33610.1	16845477
AT2G33610.1	Solyc03g096670.2.1	AT3G11410.1	19033529
AT2G33610.1	Solyc05g052980.2.1	AT3G11410.1	19033529
AT2G33610.1	Solyc07g040990.2.1	AT4G26080.1	19033529
AT2G33610.1	Solyc07g040990.2.1	AT5G57050.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025895	Potato	nucleus	83.03	81.36
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	47.65	47.36
KRH51554	Soybean	nucleus	46.42	46.23
KRH60872	Soybean	nucleus	45.6	46.07
Bra021864.1-P	Field mustard	plastid	42.94	45.75
CDY23721	Canola	plastid	42.54	45.32
CDY37705	Canola	plastid	42.33	45.1
AT2G33610.1	Thale cress	nucleus	42.13	43.92
GSMUA_AchrUn_...	Banana	plastid	40.29	39.88
EES04686	Sorghum	plastid	37.63	36.95
Zm00001d053687_P001	Maize	plastid	37.42	36.53
TraesCS6A01G167800.1	Wheat	plastid	35.99	35.2
TraesCS6B01G195400.1	Wheat	plastid	35.17	34.89
HORVU6Hr1G034070.2	Barley	plastid	35.38	34.81
TraesCS6D01G156700.3	Wheat	plastid	35.17	34.61
Os02t0194000-01	Rice	nucleus	28.02	33.91
Solyc03g097450.2.1	Tomato	nucleus	24.13	20.59
Solyc06g060120.2.1	Tomato	nucleus	20.65	12.77
Solyc01g109510.2.1	Tomato	nucleus	20.25	10.48

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:K4BW03
PFAM:PF00249	PFAM:PF04433	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:SWIRM	EnsemblPlantsGene:Solyc04g082760.2
EnsemblPlants:Solyc04g082760.2.1	UniParc:UPI000276687E	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

SWI/SNF complex subunit SWI3B [Source:Projected from Arabidopsis thaliana (AT2G33610) UniProtKB/Swiss-Prot;Acc:Q84JG2]

Coordinates

chr4:-:66318264..66322180

Molecular Weight (calculated)

55046.9 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.568

Length

489 amino acids

Sequence
(BLAST)

001: MPESGEIKSQ AAKSDPQTTS PPPSQQPQTA ALPLKRPQQL ESSPNPTTPS VTDPKDVTPT TISSRITEPD FIYIPSYSRW FSWNSIHECE VRFLPEFFDG
101: RSPSKNPKTY KYYRNTIIRR FRDNPTKKIT FTEARKTIVG DVGSIRRVFD FSETWGLINY TANSSKSLIK WEEKESKSTS ASAPQNADAN GTSTDFTLPK
201: KRICNLCKTV CRIACFASDK YDLTLCARCY VSNDNRVGVN NSELRRVEIS EEVKTDWTDK ETLHLLEALM HYGDDWKKVA EHVGGRSTKE CVARFVKLPF
301: GEQFMGPPES AEMDSESRSE TMYLQSKRRR LTPFADTSNP IIAQAAFLSA LAGKEVAELA AHAAVTALSE IGEGITTGSL ESVLCGAERQ ELDGKDKLER
401: PLVEAMAQFE KEALDLERAV SDVAIETKEI EVRIAHFEER DLQMEKEWQQ LMQLKNLIFI DQLTFLVNKS GAPRAGETIR EEVIDVKAE

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.