Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001865 | Potato | nucleus | 84.13 | 84.13 |
| VIT_03s0063g02410.t01 | Wine grape | nucleus | 40.85 | 37.73 |
| AT4G34430.4 | Thale cress | nucleus | 37.25 | 35.7 |
| CDY46250 | Canola | nucleus | 34.81 | 34.74 |
| GSMUA_Achr7P26780_001 | Banana | nucleus | 33.55 | 34.61 |
| GSMUA_Achr3P30500_001 | Banana | nucleus | 33.97 | 33.86 |
| Bra011533.1-P | Field mustard | nucleus | 33.23 | 33.69 |
| CDX76281 | Canola | nucleus | 34.29 | 33.61 |
| CDX75433 | Canola | nucleus | 33.12 | 33.48 |
| KRH24488 | Soybean | nucleus | 35.77 | 33.27 |
| KRH29482 | Soybean | nucleus | 36.19 | 32.66 |
| Zm00001d033825_P001 | Maize | nucleus | 28.99 | 30.34 |
| EER93546 | Sorghum | nucleus | 28.36 | 29.48 |
| Zm00001d013391_P006 | Maize | nucleus | 28.47 | 29.46 |
| TraesCS4D01G053300.2 | Wheat | nucleus | 28.57 | 29.32 |
| TraesCS4A01G261600.1 | Wheat | nucleus | 28.57 | 29.13 |
| Os04t0110300-02 | Rice | plasma membrane | 27.2 | 29.01 |
| HORVU4Hr1G008820.1 | Barley | nucleus | 28.78 | 28.54 |
| TraesCS4B01G053000.2 | Wheat | nucleus | 28.68 | 28.53 |
| EES10369 | Sorghum | nucleus | 27.09 | 28.35 |
| Zm00001d004521_P001 | Maize | nucleus, plastid | 24.44 | 27.53 |
| Solyc06g060120.2.1 | Tomato | nucleus | 17.57 | 20.99 |
| Solyc04g082760.2.1 | Tomato | nucleus | 10.48 | 20.25 |
| Solyc03g097450.2.1 | Tomato | nucleus | 11.75 | 19.37 |
| Os03t0722100-01 | Rice | cytosol, nucleus | 10.16 | 17.94 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | Gene3D:3.30.60.90 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | GO:GO:0046872 | InterPro:Homeobox-like_sf | InterPro:IPR000433 |
| InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 | UniProt:K4B3G4 | PFAM:PF00249 | PFAM:PF00569 |
| PFAM:PF04433 | PFAM:PF16495 | ScanProsite:PS01357 | PFscan:PS50135 | PFscan:PS50934 | PFscan:PS51293 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF39 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00291 | SMART:SM00717 |
| InterPro:SMARCC_C | SUPFAM:SSF46689 | SUPFAM:SSF57850 | InterPro:SWIRM | EnsemblPlantsGene:Solyc01g109510.2 | EnsemblPlants:Solyc01g109510.2.1 |
| UniParc:UPI00027689D4 | InterPro:WH-like_DNA-bd_sf | InterPro:Znf_ZZ | SEG:seg | : | : |
Description
SWI/SNF complex subunit SWI3D [Source:Projected from Arabidopsis thaliana (AT4G34430) UniProtKB/Swiss-Prot;Acc:Q8VY05]
Coordinates
chr1:+:96438266..96448142
Molecular Weight (calculated)
103193.0 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.699
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKRKDTGT PPPAADTPMT SADVPSAEAP TSRRRGGGNK RKASAIGSGA SSTPPSTLSK RQKQSAAPFP PIHNGPLTRA RQQPNNAAAA AASAASPSGF
101: GVRIESEVLP KAEVGVEEAV KVDKESNQVK EDLEALEAEI EAGIESIRSR DRNVHVVPTH AGWFSWTEVH PLEKQTMPSF FNEKLPSRTP EIYMEIRNWI
201: MKKYHTDPNI QIELNDLSEL SAGDLDVKKE VMEFLDYWGL INYHPFPQTS SVSNVDIDGD EAAKTDSLVD KLFRFESDET WTPVLPRSSV ATPSATSGFF
301: PESAIAEELM KSEGPAVEYH CNSCSADCSR KRYHCQKEAD FDLCSECFNN GKFGSGMSPS DFIVMEPGES GGASGGKWTD QETLLLLEAL ELYKENWNEI
401: AEHVATKTKA QCILHFIEMP IEDTFLDSDA EINKCVKEKE DAVLSKDDTS ASTDAPETTE SKDDGNDNQV SPTVETSKPE NVNGPIPQEE VGENCALKAL
501: REAFTAAGFY PPPGEYASFA EAGNPVMAVA AFLVKLVEAK RVTASVRSSL KSISGNPSGE NLALRHCFVL EDPPDDGKAS SDTDRPANGP VDPEDKKDEE
601: DNVEMQKEEK LTSVIEEKSL SIGQEETKGE TNIDKKCEEQ DGENHEEKNE KELEEAAHLV STSDENPEKS DTSKQSDPIP TDKEGEPASL KESDDADLAV
701: GQTPSTTAES DVLTSKLELP PGFEKESVDG ALMTIPSDSP DTPKDEDMMP AVQTKEPEQS MKSNSVLENG ENTGAGEVKD SLDGRKDPLK NKNDLDIEKI
801: KRAAVTALTA AAVKAKYLAD QEEDQIRLLT TSLIEKQLNK LESKITFFHD MDNVVMRVRE LLERSKQRLL VERSQILKSR SMTHPVPQSV PANRPGMVLA
901: NTAPRLLNAM SSQRIPFSRP IMSGTPTPSS FMPPTVSGNS MQPSK
101: GVRIESEVLP KAEVGVEEAV KVDKESNQVK EDLEALEAEI EAGIESIRSR DRNVHVVPTH AGWFSWTEVH PLEKQTMPSF FNEKLPSRTP EIYMEIRNWI
201: MKKYHTDPNI QIELNDLSEL SAGDLDVKKE VMEFLDYWGL INYHPFPQTS SVSNVDIDGD EAAKTDSLVD KLFRFESDET WTPVLPRSSV ATPSATSGFF
301: PESAIAEELM KSEGPAVEYH CNSCSADCSR KRYHCQKEAD FDLCSECFNN GKFGSGMSPS DFIVMEPGES GGASGGKWTD QETLLLLEAL ELYKENWNEI
401: AEHVATKTKA QCILHFIEMP IEDTFLDSDA EINKCVKEKE DAVLSKDDTS ASTDAPETTE SKDDGNDNQV SPTVETSKPE NVNGPIPQEE VGENCALKAL
501: REAFTAAGFY PPPGEYASFA EAGNPVMAVA AFLVKLVEAK RVTASVRSSL KSISGNPSGE NLALRHCFVL EDPPDDGKAS SDTDRPANGP VDPEDKKDEE
601: DNVEMQKEEK LTSVIEEKSL SIGQEETKGE TNIDKKCEEQ DGENHEEKNE KELEEAAHLV STSDENPEKS DTSKQSDPIP TDKEGEPASL KESDDADLAV
701: GQTPSTTAES DVLTSKLELP PGFEKESVDG ALMTIPSDSP DTPKDEDMMP AVQTKEPEQS MKSNSVLENG ENTGAGEVKD SLDGRKDPLK NKNDLDIEKI
801: KRAAVTALTA AAVKAKYLAD QEEDQIRLLT TSLIEKQLNK LESKITFFHD MDNVVMRVRE LLERSKQRLL VERSQILKSR SMTHPVPQSV PANRPGMVLA
901: NTAPRLLNAM SSQRIPFSRP IMSGTPTPSS FMPPTVSGNS MQPSK
001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
Arabidopsis Description
CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.