CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24488	Soybean	nucleus	73.64	75.89
VIT_03s0063g02410.t01	Wine grape	nucleus	40.21	41.15
PGSC0003DMT400001865	Potato	nucleus	33.62	37.25
AT4G34430.4	Thale cress	nucleus	34.48	36.61
GSMUA_Achr7P26780_001	Banana	nucleus	31.9	36.46
Bra011533.1-P	Field mustard	nucleus	32.28	36.27
Solyc01g109510.2.1	Tomato	nucleus	32.66	36.19
CDX76281	Canola	nucleus	33.05	35.89
GSMUA_Achr3P30500_001	Banana	nucleus	32.47	35.87
CDX75433	Canola	nucleus	31.9	35.72
CDY46250	Canola	nucleus	32.0	35.37
Os04t0110300-02	Rice	plasma membrane	26.36	31.15
TraesCS4D01G053300.2	Wheat	nucleus	26.93	30.62
TraesCS4A01G261600.1	Wheat	nucleus	27.03	30.53
EER93546	Sorghum	nucleus	26.27	30.25
EES10369	Sorghum	nucleus	26.07	30.23
Zm00001d033825_P001	Maize	nucleus	25.88	30.01
Zm00001d013391_P006	Maize	nucleus	26.17	30.01
TraesCS4B01G053000.2	Wheat	nucleus	27.13	29.89
HORVU4Hr1G008820.1	Barley	nucleus	27.03	29.7
Zm00001d004521_P001	Maize	nucleus, plastid	20.92	26.1
KRH51554	Soybean	nucleus	11.56	24.64
KRH17984	Soybean	nucleus	17.1	23.4
KRH16394	Soybean	nucleus	17.19	23.2
KRH64632	Soybean	nucleus	17.38	23.18
KRH60872	Soybean	nucleus	10.7	23.14
KRH53271	Soybean	nucleus	17.29	23.06
KRH53340	Soybean	nucleus	10.03	20.08
KRH64580	Soybean	nucleus	10.03	19.92
Os03t0722100-01	Rice	cytosol, nucleus	9.17	17.94

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100799723	MapMan:12.4.2.1	Gene3D:3.30.60.90	EMBL:ACUP02006801
ncoils:Coil	EnsemblPlantsGene:GLYMA_11G118900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0046872	InterPro:Homeobox-like_sf	UniProt:I1LJE7	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	EnsemblPlants:KRH29482	ProteinID:KRH29482	ProteinID:KRH29482.1	ProteinID:KRH29483.1	PFAM:PF00249
PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000294E42F
InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:9029351..9035471

Molecular Weight (calculated)

113196.0 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.644

Length

1047 amino acids

Sequence
(BLAST)

0001: MFGRQPSTTT VSLTQIFFFP NPPFLLLVSM EEKRRDAAPS AADSPASEPA TSRRRAGANK RKSGALSASG SSSAPSKRAS RDKASPLHPP PLHNGPLTRA
0101: RQTPNNLASA SSSAGASAPA AVKRSERAHP SAAESAALAE QLKKESEWET LEAAIEAEFE AIRSRGANAH VVPTHSGWFS WSCIHPIEKQ MLPSFFNSKT
0201: DNRTPDVYME IRNWIMKKFH SNPNVQIELK DMSQLNVGDS DARQEVMEFL DYWGLINFHP FPSMDSAMAT GSDDGEAEKN SLLEKLYHFE TLQLCPPVQR
0301: SSQMTPATTS GLFPESTIAE ELVKQEGPAV EMLEYHCNSC SADCSRKRYH CQKQADFDLC TDCFSNRRFG SGMSSLDFIL MEPAEVAGVN GGKWTDQETL
0401: LLLEALELYK ENWNEIAEHV GTKTKAQCIL HFVQMPIEDT FVDCDDDVVA VCKETVDPVA TNNDSSMDKD ASECIENDTS DGIKDNDKTS KAEDLEVKVN
0501: QEETTKLQEG SDEKSTEGTS KSEDAVKVKI DQEAGNDCAI NALKEAFAAV GYSPGPEGPS SFAEVGNPVM ALATFLAHLV GSDVAVASAH SSIKSMSRNS
0601: PGTELAARCC FLLKDPPDNE KEPTNSERDS KSEGDQDEVN VKQDKPTLED KDLPNDHSNT KIETNALEVK GQPASTDDGA LEKPISSKEQ AVSNHEGGLD
0701: NGNDPNNAKL PNDQAPATLH NSGGSTSKAE IPLCSDKAQE ETLIEESCPS VKDKHVSDSL LSDTSKDAEM VSNSIPSTKS KPQNPEPTNP ACESLETTDS
0801: VMDVDGVSNS LPSEKIDSQP LITSKSSQCN GTEKDVDMMS PSNPVVSNSG AENGPNTGAG KDHADNGAKV EDDGTETKQD SSFEKVKRAA VSTLAAAAAK
0901: AKLLANQEED QIRQLTSLLI EKQLHKLETK LAFFNDVENV VMRAREHVER SRHKLYHERA LIIASRLGIP PSSSRGVPPS ITTNRIPTNI ANSLPRPQMM
1001: MNPPRPLISR PAGTVATTLQ NPLVSSTAAG NSVRPSNQEK LSSVGTK

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.