Factsheet for Os04t0110300-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10369	Sorghum	nucleus	51.92	50.94
GSMUA_Achr7P26780_001	Banana	nucleus	34.2	33.08
Zm00001d004521_P001	Maize	nucleus, plastid	31.04	32.78
GSMUA_Achr3P30500_001	Banana	nucleus	34.09	31.86
Solyc01g109510.2.1	Tomato	nucleus	29.01	27.2
PGSC0003DMT400001865	Potato	nucleus	29.01	27.2
CDX75433	Canola	nucleus	28.67	27.17
Bra011533.1-P	Field mustard	nucleus	28.44	27.04
KRH24488	Soybean	nucleus	30.47	26.57
CDX76281	Canola	nucleus	28.89	26.56
AT4G34430.4	Thale cress	nucleus	29.46	26.47
KRH29482	Soybean	nucleus	31.15	26.36
CDY46250	Canola	nucleus	27.99	26.19
VIT_03s0063g02410.t01	Wine grape	nucleus	30.02	26.0
Os03t0722100-01	Rice	cytosol, nucleus	13.32	22.06
Os02t0194000-01	Rice	nucleus	9.37	20.54
Os04t0480300-01	Rice	cytosol	12.42	19.64
Os11t0183700-01	Rice	mitochondrion	17.04	19.26
Os12t0176700-00	Rice	nucleus	16.03	16.67
Os04t0480400-01	Rice	nucleus	4.4	14.18

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	EntrezGene:4334928	ProteinID:BAS87566.1
ProteinID:CAE01777.2	ProteinID:EEE60386.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
EnsemblPlantsGene:Os04g0110300	EnsemblPlants:Os04t0110300-02	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357
PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	UniProt:Q7XSW0
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000021C722	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_015633469.1	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

SWIRM domain-containing protein CHB704Similar to H0201G08.8 protein. (Os04t0110300-01);Myb, DNA-binding domain containing protein. (Os04t0110300-02)

Coordinates

chr4:+:602300..608876

Molecular Weight (calculated)

97380.4 Da

IEP (calculated)

5.527

GRAVY (calculated)

-0.601

Length

886 amino acids

Sequence
(BLAST)

001: MEPNPPPPPA AATATYRRRG KPKPKPKRKA AKPPSPSPPP KRQARDDPPH TGPLTRHSPL NPAPEDAPPQ LHAGERDPPP RAWIEPAKLP PVSEEVQAVL
101: SRGAGVHVVP SFAGWFSWKE IHQIEKQALP SFFDGISLRR TPEIYLGIRN FIMKKFHSNP QMHLELKDLS ELSDGEMDAQ LKVLEFLSHW GLINFHPFPP
201: AVQGVSELVE SITNADTEEK ISVVDKLFQF ETLQSYLIPA PNQAEVTAPI HTPSLLSEPT LTEDSITQAE SSVEYHCNSC SVDCSRKRYH CRTQADFDLC
301: CDCYDKGNLD AGMSQTDFII MESAEIPGFG GTSWTDQETL LLLEALEIFQ AKWGDIAEHV ATKSKAQCML HFLKMPIMDP FLHDGDVNEI SQETAEQVSA
401: EQGTSRVTEK MEVEDKTKEI KTNDRKTAAK PKLNLTETEV NLDDNVVANN DTKSSGDINV DVCSNTGVSN RSSDTEPTKK ETSGENTSNI VNDVLKYAFE
501: AVGHIPKIEG LGSFTEAGNP VMALVAFLSG LVDHDDVTTL CCSSLKAISD MSPALQLATM HCFILQDPPN DLKDPPVSIS FANTDCGQQK DKDATSNPSV
601: TDNDDNLKEE SALSVEEPNT TSTSSKNTRK LSNAKESKDE SPQVEPKPSS ANDCDNPISQ VAKRASDNIR GHSSTVLPVS LNNTNEPCSI SSQEASAGNT
701: KDTSHTEHIE GDKPIYEDPP LEGKVELNKI EHEVTDLSAV QQHESIQTSL KKGYIQDHNS IKKTVADDVS VQRLQRAAAS AISAAAVKSK LLAKHEEYQI
801: QRLAALVIDK QLHKMQAKMS VFTEADNLVL RAREHTERTR KKLLMERSAI IASRMAALPP RPNHQPGMPG SRLPVGYGVN QHLRRS

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.