Factsheet for Os04t0480300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0962600-01
Os02t0549600-01
Os04t0430100-01
Os04t0480300-01
Os11t0183700-01
Os12t0176700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	Os11t0183700-01	AT1G21700.1	16055636
AT2G47620.1	Os12t0176700-00	AT1G21700.1	16055636
AT2G47620.1	Os04t0480300-01	AT2G47620.1	16055636
AT2G47620.1	Os01t0962600-01	AT5G52650.1	21798944
AT2G47620.1	Os02t0549600-01	AT5G52650.1	21798944
AT2G47620.1	Os04t0430100-01	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10999	Sorghum	nucleus	66.07	66.67
TraesCS2D01G337400.1	Wheat	nucleus	66.07	66.55
TraesCS2B01G356600.1	Wheat	nucleus	65.36	65.71
HORVU2Hr1G082880.12	Barley	nucleus	42.5	62.63
GSMUA_Achr9P16230_001	Banana	nucleus	43.75	42.46
Zm00001d003284_P001	Maize	nucleus	65.54	41.61
CDX83324	Canola	nucleus	33.21	37.8
KRH53340	Soybean	nucleus	35.0	37.48
VIT_17s0000g00990.t01	Wine grape	cytosol	37.5	37.3
Bra004441.1-P	Field mustard	nucleus	33.93	36.97
CDX95728	Canola	nucleus	32.86	36.95
CDX80122	Canola	nucleus	33.39	36.52
KRH64580	Soybean	nucleus	34.29	36.43
CDY66036	Canola	nucleus	33.75	36.42
AT2G47620.1	Thale cress	nucleus	32.68	35.74
Solyc03g097450.2.1	Tomato	nucleus	32.32	31.59
Os02t0194000-01	Rice	nucleus	17.5	24.26
Os11t0183700-01	Rice	mitochondrion	20.54	14.67
Os12t0176700-00	Rice	nucleus	20.18	13.26
Os04t0110300-02	Rice	plasma membrane	19.64	12.42
Os03t0722100-01	Rice	cytosol, nucleus	10.71	11.21
Os04t0480400-01	Rice	nucleus	5.36	10.91

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EMBL:AK102453	ProteinID:BAF15014.1	ProteinID:BAS89730.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	EnsemblPlantsGene:Os04g0480300	EnsemblPlants:Os04t0480300-01	PFAM:PF00249	PFAM:PF04433
PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	UniProt:Q0JCC3
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI0000DD912D	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

SWIRM domain-containing protein CHB703Myb, DNA-binding domain containing protein. (Os04t0480300-01)

Coordinates

chr4:+:24021491..24025994

Molecular Weight (calculated)

62086.1 Da

IEP (calculated)

6.057

GRAVY (calculated)

-0.596

Length

560 amino acids

Sequence
(BLAST)

001: MSPPVAGAAS SGDGPPGRPP RELYTIPASS GWFQWDEIHE TERRALPEFF GGAGGSGFGT ASRNPRIYRE YRDYIISRYR EDTSRRLTFT EVRKALVGDV
101: TLLRKLFAFL DSSGLINFSA SPSRPEAQQQ QRQTEAEAVV EAPVGLQVTP RPPPSYFAEE KGGGGNENGF RLPPLTSYSD VFGEWAPGMA PICGLCGMEC
201: RDGNAQILKD GFKVCSKCYA NNDNKGEANI HPGDKKERID NHSSSAWTDA ETLLLLEGVL KHGDDWDLIA QHVRTKNKSE CIARLIQLPF GEHMLGTVNG
301: KLDNRLHKIQ TTDGKVNKST VKESSSQPTE TVDDMQIDGN EDGADKSVEE HPTKHRRLFS SIDITVSLME QLAHLTTSTS PDVVAAAADA AIKALGNENP
401: QARRAFQLSE KEYQTRAFSS NHARQSDDVG GGDRDVEMHG HPDKKQGKMF ISTTYQVRAA VATSIGVAAA RAKMLADQEE REMELLMASI IETQLKKIQY
501: KIKHFEELEL IMDQEYATLQ QMKSSLVDEW QKVLKRAFET GVPISRDEVL IKLFQNKPNL

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.