CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80122
CDX83324
CDX95728
CDX96578
CDY04665
CDY08183
CDY27840
CDY51832
CDY56154
CDY58587
CDY66036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	CDX96578	AT1G21700.1	16055636
AT2G47620.1	CDY04665	AT1G21700.1	16055636
AT2G47620.1	CDY08183	AT1G21700.1	16055636
AT2G47620.1	CDY58587	AT1G21700.1	16055636
AT2G47620.1	CDX80122	AT2G47620.1	16055636
AT2G47620.1	CDX83324	AT2G47620.1	16055636
AT2G47620.1	CDX95728	AT2G47620.1	16055636
AT2G47620.1	CDY66036	AT2G47620.1	16055636
AT2G47620.1	CDY27840	AT5G52650.1	21798944
AT2G47620.1	CDY51832	AT5G52650.1	21798944
AT2G47620.1	CDY56154	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80122	Canola	nucleus	81.5	82.62
CDX83324	Canola	nucleus	68.79	72.56
CDX95728	Canola	nucleus	66.47	69.28
AT2G47620.1	Thale cress	nucleus	63.58	64.45
KRH53340	Soybean	nucleus	46.63	46.27
KRH64580	Soybean	nucleus	46.24	45.54
VIT_17s0000g00990.t01	Wine grape	cytosol	46.63	42.98
Solyc03g097450.2.1	Tomato	nucleus	41.23	37.35
GSMUA_Achr9P16230_001	Banana	nucleus	40.27	36.22
EES10999	Sorghum	nucleus	36.8	34.41
Os04t0480300-01	Rice	cytosol	36.42	33.75
TraesCS2B01G356600.1	Wheat	nucleus	34.49	32.14
TraesCS2D01G337400.1	Wheat	nucleus	33.53	31.3
HORVU2Hr1G082880.12	Barley	nucleus	21.0	28.68
CDY37705	Canola	plastid	21.97	24.84
CDY23721	Canola	plastid	21.58	24.4
Zm00001d003284_P001	Maize	nucleus	35.45	20.86
CDY04665	Canola	cytosol, nucleus, vacuole	20.81	14.5
CDY08183	Canola	cytosol, nucleus, vacuole	20.81	14.48
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	20.42	13.91
CDX96578	Canola	nucleus	20.42	13.35
CDX75433	Canola	nucleus	20.62	11.44
CDX76281	Canola	nucleus	21.0	11.31
CDY46250	Canola	nucleus	19.85	10.88

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	GO:A0A078JJQ1	UniProt:A0A078JJQ1	EnsemblPlants:CDY66036
ProteinID:CDY66036	ProteinID:CDY66036.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EnsemblPlantsGene:GSBRNA2T00051206001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI0004EF4402	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaAnng21440DBnaAnng21440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJQ1]

Coordinates

chrLK035052:+:4547..7399

Molecular Weight (calculated)

58147.6 Da

IEP (calculated)

4.665

GRAVY (calculated)

-0.471

Length

519 amino acids

Sequence
(BLAST)

001: MEVTTDRSSS KDAELELYTI PAQSSWFVWD DIHEIERREF TEFFSESSIT RTPKVYKEYR DFIINKYRED TSRRLTFTSI RKYLIGDVNL LRKVFLFLEK
101: WGLINFLQKN DDLVVEESEA KIEQGTTPAG IRVTSTPNST RPVIAPPLVE ERAEPALTFC LTFPPLTSYS NVFKKPALFC AHCGQPCPSH SAAFYEHNNK
201: SNVNLCEKCF KNGDYGGNNS ADDFKLSLSS ATAAWTEEET LLLLESVLKH GDDWELVAQS VSTKSRLDCI SKLIELPFGE FLMGSASGRL RSDEHLSSPS
301: NLVEEMKTDG QEHKETETRE ENEEDEPPAK RKRAAMMSDG DTSLMKQVAA MACKVGPSIT TAAAKAAIAA LCDEASCPKD IFETTGDYKN SAADRSVGDR
401: DTSDIEEQEE EKEGLEDLPV GLRMRVSVAT ALGAAAAHAK ILADQEEREM ELLVASVIDQ QLKKMKSKLK FLEQLEVIMD AEEKVMEGAK DTILQERISV
501: LQSAFSGGIT KRWDHTYMK

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.