Factsheet for TraesCS2B01G356600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302600.1
TraesCS2B01G318500.1
TraesCS2B01G356600.1
TraesCS2D01G301300.1
TraesCS2D01G337400.1
TraesCS4A01G218700.1
TraesCS4B01G097500.1
TraesCS4B01G097600.1
TraesCS4D01G093900.2
TraesCS5A01G113500.1
TraesCS5B01G119800.1
TraesCS5D01G128700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	TraesCS4A01G218700.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS4B01G097500.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS4B01G097600.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS4D01G093900.2	AT1G21700.1	16055636
AT2G47620.1	TraesCS5A01G113500.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS5B01G119800.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS5D01G128700.1	AT1G21700.1	16055636
AT2G47620.1	TraesCS2B01G356600.1	AT2G47620.1	16055636
AT2G47620.1	TraesCS2D01G337400.1	AT2G47620.1	16055636
AT2G47620.1	TraesCS2A01G302600.1	AT5G52650.1	21798944
AT2G47620.1	TraesCS2B01G318500.1	AT5G52650.1	21798944
AT2G47620.1	TraesCS2D01G301300.1	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G337400.1	Wheat	nucleus	92.28	92.45
HORVU2Hr1G082880.12	Barley	nucleus	57.45	84.21
Os04t0480300-01	Rice	cytosol	65.71	65.36
EES10999	Sorghum	nucleus	64.45	64.68
GSMUA_Achr9P16230_001	Banana	nucleus	40.93	39.51
Zm00001d003284_P001	Maize	nucleus	62.12	39.23
CDX83324	Canola	nucleus	33.21	37.6
KRH53340	Soybean	nucleus	35.19	37.48
Bra004441.1-P	Field mustard	nucleus	34.11	36.97
KRH64580	Soybean	nucleus	34.65	36.62
CDX95728	Canola	nucleus	32.67	36.55
CDX80122	Canola	nucleus	33.57	36.52
VIT_17s0000g00990.t01	Wine grape	cytosol	36.27	35.88
AT2G47620.1	Thale cress	nucleus	32.67	35.55
CDY66036	Canola	nucleus	32.14	34.49
Solyc03g097450.2.1	Tomato	nucleus	31.24	30.37
TraesCS6B01G195400.1	Wheat	plastid	20.83	23.53
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	12.93	14.75
TraesCS5B01G119800.1	Wheat	nucleus	19.57	13.75
TraesCS4B01G097600.1	Wheat	nucleus	5.21	12.72
TraesCS4B01G053000.2	Wheat	nucleus	19.57	11.47

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C
SUPFAM:SSF46689	InterPro:SWIRM	EnsemblPlantsGene:TraesCS2B01G356600	EnsemblPlants:TraesCS2B01G356600.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00167
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:508950963..508956632

Molecular Weight (calculated)

61216.1 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.474

Length

557 amino acids

Sequence
(BLAST)

001: MSPAAAGAAS SGEAPPSREP YTIPASSGWF RWDDIHETER QALPDFFGGA GGTGFGTASR NPRIYREYRD YIINKYREDP ARRLTFTEVR KALVGDATLL
101: RKLFGFLDAS GLINFSATSS RPAAQQPGPG AVIEAPLGLQ VTPRPPASYF VEERLGGGSA DGAFRLPQLT SYTDVFGEWT PGKGPICGFC GDECKDGKVE
201: TLKDGFKVCS TCCTTNSAKK EEANKCSVVK QESSDNHASS AWTDAETLLL LEGVLKHGDD WDLITQHVRT KNKTECIARL IQLPFGEHML GNINNGKSDI
301: RFHTNQTTDG KTNHFIVKEA SSQSADMVDG MQIDGEEDGA DKLVEDHPSK RRRLCSSIDV TSSLMEQLAL LTTAVSPDVV AAAAAASIKA LGNENPQAKK
401: AFHLSEKEYQ VKSFSSNHVQ ESDCNVGNKE AEMHGQTVPD KKMEKNFIST AYQVRAAVGT AVGVAAARAK MLADQEEREM ELLMASIIET QLRKIQYKIK
501: HFEELELIMD QEYTAIQQIK ESLMKEWQTV LERAFQTGAP LQRDEVLTRL FLDRSTP

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.