Factsheet for AT2G47620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83324	Canola	nucleus	67.58	70.33
CDX95728	Canola	nucleus	67.58	69.48
CDX80122	Canola	nucleus	65.04	65.04
Bra004441.1-P	Field mustard	nucleus	65.04	64.79
CDY66036	Canola	nucleus	64.45	63.58
KRH53340	Soybean	nucleus	47.27	46.27
KRH64580	Soybean	nucleus	46.68	45.35
VIT_17s0000g00990.t01	Wine grape	cytosol	48.44	44.05
Solyc03g097450.2.1	Tomato	nucleus	42.19	37.7
GSMUA_Achr9P16230_001	Banana	nucleus	41.6	36.92
EES10999	Sorghum	nucleus	35.94	33.15
Os04t0480300-01	Rice	cytosol	35.74	32.68
TraesCS2B01G356600.1	Wheat	nucleus	35.55	32.67
TraesCS2D01G337400.1	Wheat	nucleus	35.35	32.55
HORVU2Hr1G082880.12	Barley	nucleus	21.09	28.42
AT2G33610.1	Thale cress	nucleus	22.66	24.73
Zm00001d003284_P001	Maize	nucleus	35.55	20.63
AT1G21700.1	Thale cress	nucleus	21.48	13.63
AT4G34430.4	Thale cress	nucleus	21.88	11.36

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:819375	ProteinID:AAM14849.1	ProteinID:AEC10865.1
ArrayExpress:AT2G47620	EnsemblPlantsGene:AT2G47620	RefSeq:AT2G47620	TAIR:AT2G47620	RefSeq:AT2G47620-TAIR-G	EnsemblPlants:AT2G47620.1
TAIR:AT2G47620.1	Symbol:ATSWI3A	EMBL:AY062794	EMBL:AY081570	Unigene:At.27229	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006338
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016514	GO:GO:0016569	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	RefSeq:NP_850476.1	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020100	PO:PO:0025022	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41
UniProt:Q8W475	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI00000A19EB	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]

Coordinates

chr2:+:19531947..19534471

Molecular Weight (calculated)

57487.7 Da

IEP (calculated)

4.533

GRAVY (calculated)

-0.454

Length

512 amino acids

Sequence
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.