Factsheet for AT1G21700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04665	Canola	cytosol, nucleus, vacuole	78.31	84.83
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	64.81	84.77
CDY08183	Canola	cytosol, nucleus, vacuole	77.82	84.18
Bra016409.1-P	Field mustard	nucleus	81.29	82.72
CDX96578	Canola	nucleus	81.29	82.62
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	77.7	82.28
VIT_18s0001g02160.t01	Wine grape	nucleus	29.86	54.4
KRH53271	Soybean	nucleus	52.17	53.63
KRH64632	Soybean	nucleus	51.92	53.38
Solyc06g060120.2.1	Tomato	nucleus	49.81	50.82
KRH17984	Soybean	nucleus	47.21	49.8
KRH16394	Soybean	nucleus	47.46	49.36
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	42.75	44.46
VIT_18s0001g02190.t01	Wine grape	nucleus	19.83	44.44
GSMUA_Achr6P25400_001	Banana	nucleus	43.12	44.39
GSMUA_Achr8P30120_001	Banana	nucleus	42.87	44.3
Os11t0183700-01	Rice	mitochondrion	42.87	44.13
Zm00001d000110_P003	Maize	mitochondrion	42.75	44.01
Zm00001d041847_P002	Maize	nucleus	41.76	43.6
EES15751	Sorghum	nucleus	41.76	43.54
HORVU4Hr1G017950.27	Barley	nucleus	28.38	43.05
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	25.9	42.83
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	40.64	42.38
TraesCS5D01G128700.1	Wheat	nucleus	41.26	42.31
TraesCS5A01G113500.1	Wheat	nucleus	41.39	42.23
TraesCS5B01G119800.1	Wheat	nucleus	41.39	42.12
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	22.55	41.74
HORVU5Hr1G037060.1	Barley	nucleus, plastid	41.39	40.34
TraesCS4B01G097600.1	Wheat	nucleus	11.28	39.91
Os12t0176700-00	Rice	nucleus	38.54	36.5
AT2G47620.1	Thale cress	nucleus	13.63	21.48
AT2G33610.1	Thale cress	nucleus	12.27	21.11
AT4G34430.4	Thale cress	nucleus	21.93	17.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:838774	ProteinID:AAD41423.1	ProteinID:AEE30144.1
ArrayExpress:AT1G21700	EnsemblPlantsGene:AT1G21700	RefSeq:AT1G21700	TAIR:AT1G21700	RefSeq:AT1G21700-TAIR-G	EnsemblPlants:AT1G21700.1
TAIR:AT1G21700.1	Symbol:ATSWI3C	EMBL:AY091026	EMBL:AY117245	Unigene:At.41645	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006338
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016514	GO:GO:0016569	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	RefSeq:NP_173589.1	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF61	UniProt:Q9XI07	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C
SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI00000A4005	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]

Coordinates

chr1:-:7620001..7624166

Molecular Weight (calculated)

88255.0 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.573

Length

807 amino acids

Sequence
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.