Factsheet for Bra017943.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004441.1-P
Bra021864.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	Bra021864.1-P	AT2G33610.1	12140326
AT1G21700.1	Bra021864.1-P	AT2G33610.1	16845477
AT1G21700.1	Bra004441.1-P	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08183	Canola	cytosol, nucleus, vacuole	99.84	82.57
Bra016409.1-P	Field mustard	nucleus	88.01	68.47
AT1G21700.1	Thale cress	nucleus	84.77	64.81
VIT_18s0001g02160.t01	Wine grape	nucleus	38.41	53.5
KRH53271	Soybean	nucleus	56.24	44.2
KRH64632	Soybean	nucleus	56.08	44.08
KRH17984	Soybean	nucleus	52.03	41.96
KRH16394	Soybean	nucleus	52.19	41.49
Solyc06g060120.2.1	Tomato	nucleus	51.05	39.82
VIT_18s0001g02190.t01	Wine grape	nucleus	22.53	38.61
TraesCS4B01G097600.1	Wheat	nucleus	13.94	37.72
GSMUA_Achr8P30120_001	Banana	nucleus	47.49	37.52
GSMUA_Achr6P25400_001	Banana	nucleus	47.0	36.99
Os11t0183700-01	Rice	mitochondrion	46.68	36.73
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	46.03	36.6
TraesCS5D01G128700.1	Wheat	nucleus	46.19	36.21
Zm00001d000110_P003	Maize	mitochondrion	45.87	36.1
TraesCS5B01G119800.1	Wheat	nucleus	46.19	35.94
EES15751	Sorghum	nucleus	45.06	35.92
TraesCS5A01G113500.1	Wheat	nucleus	46.03	35.9
Zm00001d041847_P002	Maize	nucleus	44.57	35.58
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	43.27	34.5
HORVU5Hr1G037060.1	Barley	nucleus, plastid	46.19	34.42
HORVU4Hr1G017950.27	Barley	nucleus	27.71	32.14
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	24.64	31.15
Os12t0176700-00	Rice	nucleus	41.98	30.4
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	21.39	30.28
Bra004441.1-P	Field mustard	nucleus	17.18	20.62
Bra021864.1-P	Field mustard	plastid	15.07	20.26
Bra011533.1-P	Field mustard	nucleus	23.82	15.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EnsemblPlantsGene:Bra017943	EnsemblPlants:Bra017943.1	EnsemblPlants:Bra017943.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M4DN56	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000253F13E	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT1G21700 (E=1e-185) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding

Coordinates

chrA06:-:8971974..8974710

Molecular Weight (calculated)

67697.3 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.473

Length

617 amino acids

Sequence
(BLAST)

001: MEGEGVVKRF GDKVHVLPMH SDWFAPNTVD RLERQVVPQF FSGKSPNHTP ESYMQFRNAI VSKYTDNPEK TLTISDCQGL VDGVEDEDFA RVFRFLDHWG
101: IINYCATSQC HPEPSMDVSD VREDSNGEVH VPSAALTSIE SLIKFDKPIC GHKSDSSVSC SDVDLPDLDI RIREHLCDNH CNHCSRPLPT VYFQSQKKED
201: VLLCSDCFHH ARFVAGHSCI DFVKVDTTKD YRDQDGENWS DQETLLLLEA VELYNENWVQ IADHVGSKSK AQCILHFLRL PVEDGLLDNV ELPGVTDPVN
301: PTNGFDNKGT VSNGALPGSS EQESETEINL PFVKSPNPVM ALVAFLASAV GPRVASSCAH ESLMVLSADD RSKSEGKDPS LIDETTCQNG AEAPTPLPQD
401: KVMAAFRAGL SAAATKAKLF ADHEEREIQR LSANIVNHQL KRMELKLKQF AEIETLLMKE CEQVEKTRQR FAAERARMVS ARFGSPGQTS NTNNLQGMSL
501: STGGGNNVNT LLQQQQQQGS ASSSQPSIIP GFSNNPQLHA QMQFMARQQQ QQQAFSFGPR LPLNAIQTNA GSTPSLFGNN QLNNNPAGAA SINQPPFSHP
601: MVRSSTGSAS GSGLGLN

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.