Factsheet for VIT_18s0001g02160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g00990.t01
VIT_18s0122g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	VIT_18s0122g00670.t01	AT2G33610.1	12140326
AT1G21700.1	VIT_18s0122g00670.t01	AT2G33610.1	16845477
AT1G21700.1	VIT_17s0000g00990.t01	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G097600.1	Wheat	nucleus	20.99	40.79
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	53.5	38.41
KRH64632	Soybean	nucleus	63.88	36.05
KRH53271	Soybean	nucleus	63.21	35.67
KRH16394	Soybean	nucleus	62.08	35.44
KRH17984	Soybean	nucleus	60.05	34.77
Solyc06g060120.2.1	Tomato	nucleus	61.4	34.39
CDY04665	Canola	cytosol, nucleus, vacuole	53.5	31.81
CDY08183	Canola	cytosol, nucleus, vacuole	53.5	31.77
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	54.4	31.63
Bra016409.1-P	Field mustard	nucleus	53.72	30.01
CDX96578	Canola	nucleus	53.72	29.97
AT1G21700.1	Thale cress	nucleus	54.4	29.86
GSMUA_Achr6P25400_001	Banana	nucleus	48.98	27.68
GSMUA_Achr8P30120_001	Banana	nucleus	48.08	27.27
TraesCS5D01G128700.1	Wheat	nucleus	47.63	26.81
EES15751	Sorghum	nucleus	46.5	26.61
TraesCS5B01G119800.1	Wheat	nucleus	47.63	26.61
Zm00001d041847_P002	Maize	nucleus	46.28	26.52
TraesCS5A01G113500.1	Wheat	nucleus	47.18	26.42
Os11t0183700-01	Rice	mitochondrion	46.28	26.15
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	45.37	25.9
Zm00001d000110_P003	Maize	mitochondrion	44.47	25.13
HORVU5Hr1G037060.1	Barley	nucleus, plastid	46.73	25.0
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	41.31	23.64
Os12t0176700-00	Rice	nucleus	40.86	21.24
HORVU4Hr1G017950.27	Barley	nucleus	17.83	14.85
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	15.8	14.23
VIT_17s0000g00990.t01	Wine grape	cytosol	17.61	13.85
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	14.0	12.7
VIT_03s0063g02410.t01	Wine grape	nucleus	28.22	12.22
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	9.03	9.17
VIT_18s0001g02190.t01	Wine grape	nucleus	5.19	6.39

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253973	wikigene:100253973	MapMan:12.4.2.1	ProteinID:CCB45469	ProteinID:CCB45469.1
ncoils:Coil	UniProt:F6H0J7	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:IPR017884	EntrezGene:LOC100253973	wikigene:LOC100253973	PFAM:PF00249	PFAM:PF16495	PFscan:PS51293
PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C
SUPFAM:SSF46689	TIGR:TC59563	TIGR:TC60034	UniParc:UPI0002109D34	ArrayExpress:VIT_18s0001g02160	EnsemblPlantsGene:VIT_18s0001g02160
EnsemblPlants:VIT_18s0001g02160.t01	unigene:Vvi.1002	RefSeq:XP_002284548	RefSeq:XP_002284548.2	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:2543141..2554330

Molecular Weight (calculated)

47856.6 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.327

Length

443 amino acids

Sequence
(BLAST)

001: MSSVLNLELD FIEQVDVMLC TDCFYEGRFV TGHSSIDFIR LDSTKDYGDI DSESWSDQET LLLLEAMESY NENWNDIAEH VGTKSKAQCI LHFIRMPMED
101: GLLENIEVPS MPTLSNSLNK VDQERSHSNS NGNLAGSCLP GLDSDSRLPF ANSGNPVMSM VAFLATAVGP RVAAACAHAS LIALSEENAL AAASGFIIPP
201: EGSGHGNRMK EGGPHGELTN SSQHQDGNIA IQGSWGQNDA EVASLPVEKV RAAAKAGLAA AAMKAKLFAD HEEREIQRLS ANIINHQLKR LELKLKQFAE
301: VETLLMKECE QVERARQRFA AERARIISTR FGPTGVTSPM NLPGVAPALV SNNTGNNRQQ IISASPSQPS ISGYGNNQQM HPHMSFMPRQ PMFSFGPRLP
401: LAAIQPSSST PSPNAMFNNS GNSQPTLNHP MMRPVSGTSS GLG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.