Factsheet for GSMUA_Achr6P25400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P16230_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	GSMUA_AchrUn_...	AT2G33610.1	12140326
AT1G21700.1	GSMUA_AchrUn_...	AT2G33610.1	16845477
AT1G21700.1	GSMUA_Achr9P16230_001	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30120_001	Banana	nucleus	78.19	78.49
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	33.16	59.63
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	58.04	58.63
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	35.84	57.58
Zm00001d000110_P003	Maize	mitochondrion	57.4	57.4
Os11t0183700-01	Rice	mitochondrion	57.27	57.27
TraesCS5D01G128700.1	Wheat	nucleus	57.02	56.8
TraesCS5A01G113500.1	Wheat	nucleus	57.02	56.51
TraesCS5B01G119800.1	Wheat	nucleus	57.14	56.49
Zm00001d041847_P002	Maize	nucleus	55.48	56.27
EES15751	Sorghum	nucleus	55.48	56.2
HORVU4Hr1G017950.27	Barley	nucleus	38.01	56.02
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	54.21	54.91
HORVU5Hr1G037060.1	Barley	nucleus, plastid	57.78	54.71
VIT_18s0001g02160.t01	Wine grape	nucleus	27.68	48.98
Os12t0176700-00	Rice	nucleus	52.04	47.89
KRH64632	Soybean	nucleus	47.45	47.39
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	36.99	47.0
KRH53271	Soybean	nucleus	46.43	46.37
CDY08183	Canola	cytosol, nucleus, vacuole	43.62	45.84
TraesCS4B01G097600.1	Wheat	nucleus	13.27	45.61
CDY04665	Canola	cytosol, nucleus, vacuole	42.86	45.1
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	43.37	44.62
KRH17984	Soybean	nucleus	43.49	44.58
Bra016409.1-P	Field mustard	nucleus	44.52	44.01
CDX96578	Canola	nucleus	44.52	43.95
KRH16394	Soybean	nucleus	43.49	43.94
Solyc06g060120.2.1	Tomato	nucleus	44.26	43.87
AT1G21700.1	Thale cress	nucleus	44.39	43.12
VIT_18s0001g02190.t01	Wine grape	nucleus	18.24	39.72
GSMUA_AchrUn_...	Banana	plastid	14.92	23.68
GSMUA_Achr9P16230_001	Banana	nucleus	15.31	20.8
GSMUA_Achr7P26780_001	Banana	nucleus	22.19	19.0
GSMUA_Achr3P30500_001	Banana	nucleus	22.32	18.46

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr6G25400_001	EnsemblPlants:GSMUA_Achr6P25400_001	EnsemblPlants:GSMUA_Achr6T25400_001	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M0TA36	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000294B4CB	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative SWI/SNF complex subunit SWI3C [Source:GMGC_GENE;Acc:GSMUA_Achr6G25400_001]

Coordinates

chr6:-:26484439..26492287

Molecular Weight (calculated)

85665.5 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.451

Length

784 amino acids

Sequence
(BLAST)

001: MSPASPSLPS SDQIASDSRL KWRKRKRKRD ANPRRQNMRD DEDDDDEDAA AAAEEVEDDG RDSPAILAAA DPVLDLRESE VLSGGGHRVS DFPSAVRRSV
101: NRPHSSVLAL VAAERSNAAR SWAPPCLENI SHGQLQVLSV VLPDNPSLQQ QPDLDNSSSY VCTPPPLMEG KGVVKRFGKE QLLLVPVHSD WFSASTVNRL
201: ERQVVPHFVT GTSGDHTPER YIGLRNKIIS KYLENSGKRL SFADCQALVP NNELYDLSRI VRFLDHWGII NYLAASSVHR GLRMAGSLVR EEASGELQLQ
301: TSPLRSIDSL MLFDRPKCSL RLEDVAFLSH SASTDSDAGI VDLDGRIRER FAEHSCNFCS CPLTSLHYQS QKEVDIMLCA DCFHDAKFVT GHSSLDFTRM
401: DSKKDNSDID GDSWTDQETL LLLEALEKYN DNWNEIAEYV GTKSKAQCIC HFLRLPTEDG LLENVELPHM PTISDSSIRH DPGLSNSNSN GNVEGLSNGD
501: FTTTNQLPFA NSANPVMSLV AFLTSAIGPR VAAACASAAL SVLTREDCRS DGSHTEVGIH RPHANLGHQK DGTDGQVRHA KNGATSPAPD LVKYAAMYGL
601: SAAAVKAKLF ADQEEREIQR LAATIINHQL KRLELKLKQF AEVETLLLKE CEQAERMRQR LSAERVRMMS TRIGSTTNNI PSSAGATTTA PAAVNANSGQ
701: PALSPLVGQV NMPQAAYDNN LPGHHQMPLV QRQQMFAFGP RLPLSAIHPA PGSSQNVVFN SGIANSSATN PHPSLRSSSG NNQT

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.