CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04686
EES10999

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	EES04686	AT2G33610.1	12140326
AT1G21700.1	EES04686	AT2G33610.1	16845477
AT1G21700.1	EES10999	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000110_P003	Maize	mitochondrion	91.24	90.31
Os11t0183700-01	Rice	mitochondrion	79.38	78.57
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	42.14	75.0
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	46.39	73.77
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	71.65	71.83
HORVU4Hr1G017950.27	Barley	nucleus	48.97	71.43
EES15751	Sorghum	nucleus	66.62	66.8
GSMUA_Achr6P25400_001	Banana	nucleus	58.63	58.04
GSMUA_Achr8P30120_001	Banana	nucleus	57.6	57.23
TraesCS4B01G097600.1	Wheat	nucleus	16.37	55.7
KRH53271	Soybean	nucleus	47.42	46.88
KRH64632	Soybean	nucleus	47.29	46.75
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	36.6	46.03
VIT_18s0001g02160.t01	Wine grape	nucleus	25.9	45.37
KRH16394	Soybean	nucleus	44.07	44.07
KRH17984	Soybean	nucleus	43.43	44.05
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	43.17	43.96
Solyc06g060120.2.1	Tomato	nucleus	44.72	43.87
CDY08183	Canola	cytosol, nucleus, vacuole	42.14	43.83
Bra016409.1-P	Field mustard	nucleus	44.33	43.38
CDX96578	Canola	nucleus	44.33	43.32
CDY04665	Canola	cytosol, nucleus, vacuole	41.49	43.22
AT1G21700.1	Thale cress	nucleus	44.46	42.75
VIT_18s0001g02190.t01	Wine grape	nucleus	19.72	42.5
EES04686	Sorghum	plastid	14.43	22.49
EES10999	Sorghum	nucleus	14.56	20.36
EER93546	Sorghum	nucleus	19.07	16.28
EES10369	Sorghum	nucleus	18.43	15.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:A0A1Z5RHL3	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
EnsemblPlants:OQU83031	ProteinID:OQU83031	ProteinID:OQU83031.1	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	EnsemblPlantsGene:SORBI_3005G064000	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI0003C6CC80
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:7022160..7027223

Molecular Weight (calculated)

84052.9 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.457

Length

776 amino acids

Sequence
(BLAST)

001: MPRKASSTSD SRLKWRKRKR NPDASPSKPS TSAAADHSDD SDSADEDAAV AAHGAAPGDD DEAAPALSLR EAEVLPSAEA ISGFPAAKRR VVNRPHPSVL
101: ALLEAERSAR SGDAPTVAPP ALENISHGQL QVLSGVLPDH PSLATDPDKP SLYVCTPPPL MEGHGVPKQF QGRLHVVPKH SDWFSPGTVH RLERQVVPHF
201: FTGKSPGHTP EKYVMLRNKV IAKYLENPNK RLAFAECQGL VGSTAELYDL SRIVRFLDTW GIINYLAAGS VHRGLRMATS LLREEPTGEL QLLTAPLKSI
301: DGLILFDRPK CSLPAEDVSS MAASSSNSEA VDFDAAFADL DGKIRERLSE NSCSYCLQPL PSLHYRSQKE ADTFLCSECF HDARYITGHS SLDFQRVDGD
401: NDGSENDSDK WTDEETLLLL EGIEKYNDNW DDIASHVGTK SKAQCIYHFI QLPVEDGLLE NVEIPNVPIP FRPQSNGYQH SDSNGSTSGA PVQNIQQGNQ
501: LPFINSSNPV MSLVAFLASS IGPRVAASCA HAALSFLTRD DDSRVSSEGM HADGMGNGAN PNFRNHYGAS PSISPENVKH AAMFGLSAAA MKSKLFADQE
601: EREVQRLAAT VINHQLKRLE LKLKQFAEVE TLLLKECEQV ERVRQRISAE RVRMRSALLG PTGSGLPGGS STMPSNPAGM SPRPIGVPGS MPQTSMAATY
701: ANNMQGHGHP PMPQMPFLHQ RPQMLSFGPR LPLSAIQTQP SPQASNIMFN SGMPNSIAPN HHQLLRSSSG NNSSAG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.