Factsheet for VIT_18s0001g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g00990.t01
VIT_18s0122g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	VIT_18s0122g00670.t01	AT2G33610.1	12140326
AT1G21700.1	VIT_18s0122g00670.t01	AT2G33610.1	16845477
AT1G21700.1	VIT_17s0000g00990.t01	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	35.0	28.9
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	35.28	26.02
HORVU4Hr1G017950.27	Barley	nucleus	37.78	25.56
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	38.61	22.53
KRH64632	Soybean	nucleus	48.61	22.29
KRH53271	Soybean	nucleus	47.5	21.78
CDY08183	Canola	cytosol, nucleus, vacuole	44.72	21.58
CDY04665	Canola	cytosol, nucleus, vacuole	43.89	21.21
KRH17984	Soybean	nucleus	45.0	21.18
Solyc06g060120.2.1	Tomato	nucleus	46.11	20.99
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	43.89	20.73
KRH16394	Soybean	nucleus	44.44	20.62
Bra016409.1-P	Field mustard	nucleus	44.44	20.18
CDX96578	Canola	nucleus	44.44	20.15
AT1G21700.1	Thale cress	nucleus	44.44	19.83
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	42.5	19.72
GSMUA_Achr8P30120_001	Banana	nucleus	41.39	19.08
Zm00001d000110_P003	Maize	mitochondrion	40.83	18.75
Os11t0183700-01	Rice	mitochondrion	40.56	18.62
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	39.72	18.48
TraesCS5D01G128700.1	Wheat	nucleus	40.28	18.42
Zm00001d041847_P002	Maize	nucleus	39.44	18.37
TraesCS5A01G113500.1	Wheat	nucleus	40.28	18.33
TraesCS5B01G119800.1	Wheat	nucleus	40.28	18.29
GSMUA_Achr6P25400_001	Banana	nucleus	39.72	18.24
EES15751	Sorghum	nucleus	39.17	18.22
HORVU5Hr1G037060.1	Barley	nucleus, plastid	40.56	17.63
Os12t0176700-00	Rice	nucleus	39.17	16.55
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	14.72	10.77
VIT_17s0000g00990.t01	Wine grape	cytosol	16.39	10.48
VIT_03s0063g02410.t01	Wine grape	nucleus	19.72	6.94
VIT_18s0001g02160.t01	Wine grape	nucleus	6.39	5.19
TraesCS4B01G097600.1	Wheat	nucleus	2.78	4.39

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.4.2.1	ProteinID:CCB45470	ProteinID:CCB45470.1	UniProt:F6H0J8	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036388	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61
SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI0002109D35	ArrayExpress:VIT_18s0001g02190	EnsemblPlantsGene:VIT_18s0001g02190	EnsemblPlants:VIT_18s0001g02190.t01
InterPro:WH-like_DNA-bd_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:2564080..2567938

Molecular Weight (calculated)

40434.3 Da

IEP (calculated)

8.257

GRAVY (calculated)

-0.372

Length

360 amino acids

Sequence
(BLAST)

001: MFLENISHGQ LQALSAVPAD SPSLATSDQE RSDGGGYVVA PPQIMEGRGV IKRFWNGRVH AVPMHSDWFS PNTVHRLERQ VVPHFFSGKS PDHTAELYME
101: CRNLIVAKYM EDPEKRLSVS DCKGLVAGIQ EEDLTRIVRF LDHWGIINYC ASSVPNREPW SSTSYLREDS NGEVHVPSAA LKSIDSLIKF DKPKCRLKAA
201: EVYSSLSCNG DEDSDLDCKI RERLSDNRCN YCSRPLPIGY YQSQKEDRGA EFVSPIGRMG FVAWAKRFGW SLGLWMGPSM LVECLLFPSA DSFVVGKPLP
301: APSTSENRYQ LPRRWKTVID SLVVSKQLPT PSLLTNRYRL PRCRQTVTNA LVVGKPLSAH

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.