Factsheet for Bra016409.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004441.1-P
Bra021864.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	Bra021864.1-P	AT2G33610.1	12140326
AT1G21700.1	Bra021864.1-P	AT2G33610.1	16845477
AT1G21700.1	Bra004441.1-P	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96578	Canola	nucleus	100.0	99.87
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	68.47	88.01
AT1G21700.1	Thale cress	nucleus	82.72	81.29
VIT_18s0001g02160.t01	Wine grape	nucleus	30.01	53.72
KRH53271	Soybean	nucleus	52.21	52.74
KRH64632	Soybean	nucleus	52.08	52.61
KRH17984	Soybean	nucleus	47.41	49.15
KRH16394	Soybean	nucleus	47.67	48.71
Solyc06g060120.2.1	Tomato	nucleus	48.42	48.55
GSMUA_Achr8P30120_001	Banana	nucleus	44.01	44.69
GSMUA_Achr6P25400_001	Banana	nucleus	44.01	44.52
VIT_18s0001g02190.t01	Wine grape	nucleus	20.18	44.44
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	43.38	44.33
Os11t0183700-01	Rice	mitochondrion	43.0	43.49
Zm00001d000110_P003	Maize	mitochondrion	42.75	43.24
EES15751	Sorghum	nucleus	41.87	42.89
Zm00001d041847_P002	Maize	nucleus	41.61	42.69
TraesCS5D01G128700.1	Wheat	nucleus	42.12	42.44
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	26.1	42.42
HORVU4Hr1G017950.27	Barley	nucleus	28.37	42.29
TraesCS5B01G119800.1	Wheat	nucleus	42.24	42.24
TraesCS5A01G113500.1	Wheat	nucleus	42.12	42.23
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	23.08	41.97
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	40.48	41.47
HORVU5Hr1G037060.1	Barley	nucleus, plastid	42.37	40.58
TraesCS4B01G097600.1	Wheat	nucleus	11.22	39.04
Os12t0176700-00	Rice	nucleus	39.34	36.62
Bra021864.1-P	Field mustard	plastid	13.24	22.88
Bra004441.1-P	Field mustard	nucleus	13.24	20.43
Bra011533.1-P	Field mustard	nucleus	20.81	17.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EnsemblPlantsGene:Bra016409	EnsemblPlants:Bra016409.1	EnsemblPlants:Bra016409.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M4DIT2	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI00025467B0	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT1G21700 (E=0.0) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding

Coordinates

chrA08:+:18317946..18321406

Molecular Weight (calculated)

86216.9 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.494

Length

793 amino acids

Sequence
(BLAST)

001: MPATEDRRGK WKRRRRGGRR PKQEEEDIEE EDDEEMEEAD NNADELHQNG AAAPDPGPGT SEVVEDSGER ISGFPSVVRR VVVRPHASVT AVVAAERGCL
101: MGEVKGQGLL LPALENISFG QLQALSSVPA DSLCFDPERS DGAAYVISPP SIMEGEGVVK RFGDKVHVLP MHSDWFAPNT VDRLERQVVP QYFCGKSPNH
201: TPESYMRFRN AIVSKYMDNP ERTLTISDCQ GLVDGADTED LARVFRFLDH WGIINYCATS QCHPGPSKGA SDVREDANGE VHVPSAALTS IDSLIRFDKP
301: ICRHKADEVS SSLPSSDVDL PDLDIRIREH LCDNHCNHCS RPLPTVYFQS QKKEDVLLCS DCFHDAKFVV GHSCIDFVRV DTSKDYRDQD GENWSDQETL
401: LLLEAVELYN ENWVQIADHV GSKSKAQCIL HFLRLPVEDG LLDNVELPGV TDPANPTNGY DHRGGASNGA LPGTSEQDSD TEINLPFVKS PNPVMALVAF
501: LASAVGPRVA ASCAHECLTV LSADDRLKSD GLQGKNPTML DGENQQLDDN SGAQKTSCQN GAEAPTPLPQ DKVMAAFKAG LSAASTKAKL FADHEEREIQ
601: RLSANIVNHQ LKRMELKLKQ FAEIETLLMK ECEQVEKTRQ RFAAERARML SARFGSAGGI APQANSNNLQ GMSLSTGGGN SINTLLQQQL QQQQVSAGSS
701: QPSMIPGFSN NPQVHAQMQF MARQQQQQAF SFGPRLPLNA IQTNAGSTAS PNVMFGLNNP AGGAAASINQ TSFSNPMVRS STGSGSGSGL GLN

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.