CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH51554
KRH53340
KRH60872
KRH64580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	KRH51554	AT2G33610.1	12140326
AT1G21700.1	KRH60872	AT2G33610.1	12140326
AT1G21700.1	KRH51554	AT2G33610.1	16845477
AT1G21700.1	KRH60872	AT2G33610.1	16845477
AT1G21700.1	KRH53340	AT2G47620.1	16055636
AT1G21700.1	KRH64580	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64632	Soybean	nucleus	94.27	94.27
KRH17984	Soybean	nucleus	69.81	71.63
KRH16394	Soybean	nucleus	68.41	69.2
VIT_18s0001g02160.t01	Wine grape	nucleus	35.67	63.21
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	44.2	56.24
Solyc06g060120.2.1	Tomato	nucleus	54.52	54.11
CDY04665	Canola	cytosol, nucleus, vacuole	50.96	53.69
CDY08183	Canola	cytosol, nucleus, vacuole	50.96	53.62
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	51.34	52.89
Bra016409.1-P	Field mustard	nucleus	52.74	52.21
AT1G21700.1	Thale cress	nucleus	53.63	52.17
CDX96578	Canola	nucleus	52.74	52.14
VIT_18s0001g02190.t01	Wine grape	nucleus	21.78	47.5
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	46.88	47.42
GSMUA_Achr8P30120_001	Banana	nucleus	47.13	47.38
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	29.3	47.13
Os11t0183700-01	Rice	mitochondrion	47.01	47.07
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	26.11	47.02
GSMUA_Achr6P25400_001	Banana	nucleus	46.37	46.43
HORVU4Hr1G017950.27	Barley	nucleus	31.34	46.24
TraesCS5D01G128700.1	Wheat	nucleus	46.24	46.12
Zm00001d000110_P003	Maize	mitochondrion	45.99	46.05
TraesCS5B01G119800.1	Wheat	nucleus	46.24	45.78
EES15751	Sorghum	nucleus	44.97	45.61
TraesCS5A01G113500.1	Wheat	nucleus	45.86	45.51
Zm00001d041847_P002	Maize	nucleus	44.59	45.28
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	44.2	44.83
HORVU5Hr1G037060.1	Barley	nucleus, plastid	45.99	43.6
TraesCS4B01G097600.1	Wheat	nucleus	11.72	40.35
Os12t0176700-00	Rice	nucleus	42.04	38.73
KRH60872	Soybean	nucleus	14.14	22.93
KRH53340	Soybean	nucleus	15.03	22.56
KRH51554	Soybean	nucleus	13.89	22.2
KRH64580	Soybean	nucleus	14.65	21.82
KRH24488	Soybean	nucleus	22.93	17.72
KRH29482	Soybean	nucleus	23.06	17.29

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100790286	MapMan:12.4.2.1	EMBL:ACUP02003457	EnsemblPlantsGene:GLYMA_06G115600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	UniProt:K7KUJ4	EnsemblPlants:KRH53271	ProteinID:KRH53271	ProteinID:KRH53271.1	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI000233930F	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9407086..9413444

Molecular Weight (calculated)

86762.6 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.534

Length

785 amino acids

Sequence
(BLAST)

001: MPASPSENRT RWRKRKRDSQ ISRRHQKHEE EEDDDEENPN AAEEDHAERD YDSEDQTHHN HPNSQPHVEA EVLSDHGVQI SQFPAVIKRS VNRPHSSVTA
101: IVALERALES GDNKAQSALD APILENVSHG QLQALSSVPS DNFALDCDSS FVITPPPILE GRGVVKRFGT KVLVVPMHSD WFSPATVHRL ERQVVPHFFS
201: GKSPDHTPEK YMECRNCIVA LHMEDPGMRI TVSDCQGLLA GVNVEDLTRI VRFLDHWGII NYCVRIPSHE SPNAVSCLRD ELSGEVRVPS EALKSIDSLI
301: KFDKPNCKLK ADEIYSSLTA HSADVLDLED RIREHLSENH CNYCSCPLPV VYYQSQKEVD ILLCTDCFHD GRFVIGHSSI DFVRVDSTRD YGELDGDNWT
401: DQETLLLLEA MEIYNENWNE IAEHVGTKSK AQCILHFLRL PMEDGKFENI NVPSLSLSSN AINRDDSGRL HCYSNGVTAG PVYQTRDSDH RLPFANSGNP
501: VMALVAFLAS AVGPRVAASC AHAALAVLSE DNSGSTSQLE APGHDNRTNS ESIHYRDGGP HQETAVSNHN EDKAKVHGSW GIYEGRTTPL SAEKVKDAAK
601: AGLSAAAMKA KLFSDHEERE IQRLCANIVN HQLKRLELKL KQFAEIETLL MKECEQLERT KQRIAADRSR MMSARLGTVG ATPTMNASGV GTSMASNGNN
701: RQQIISASSS QPSISGYGNN QPVHPHMSFA PRPSMFGLGQ RLPLSMIQQS QSASSTAMFN APSNVQPTTN HPLLRPVSGT NSGLG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.