CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH16394
KRH17984
KRH19237
KRH37441
KRH51554
KRH53271
KRH60872
KRH64632
KRH73525

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	KRH16394	AT1G21700.1	12140326
AT2G33610.1	KRH17984	AT1G21700.1	12140326
AT2G33610.1	KRH53271	AT1G21700.1	12140326
AT2G33610.1	KRH64632	AT1G21700.1	12140326
AT2G33610.1	KRH16394	AT1G21700.1	16845477
AT2G33610.1	KRH17984	AT1G21700.1	16845477
AT2G33610.1	KRH53271	AT1G21700.1	16845477
AT2G33610.1	KRH64632	AT1G21700.1	16845477
AT2G33610.1	KRH51554	AT2G33610.1	12140326
AT2G33610.1	KRH60872	AT2G33610.1	12140326
AT2G33610.1	KRH51554	AT2G33610.1	16845477
AT2G33610.1	KRH60872	AT2G33610.1	16845477
AT2G33610.1	KRH73525	AT3G11410.1	19033529
AT2G33610.1	KRH02667	AT4G26080.1	19033529
AT2G33610.1	KRH12454	AT4G26080.1	19033529
AT2G33610.1	KRH19237	AT4G26080.1	19033529
AT2G33610.1	KRH37441	AT4G26080.1	19033529
AT2G33610.1	KRH02667	AT5G57050.1	19033529
AT2G33610.1	KRH12454	AT5G57050.1	19033529
AT2G33610.1	KRH19237	AT5G57050.1	19033529
AT2G33610.1	KRH37441	AT5G57050.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51554	Soybean	nucleus	85.74	84.52
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	50.62	49.8
CDY37705	Canola	plastid	46.69	49.24
AT2G33610.1	Thale cress	nucleus	46.49	47.97
CDY23721	Canola	plastid	45.25	47.71
Bra021864.1-P	Field mustard	plastid	44.83	47.28
Solyc04g082760.2.1	Tomato	nucleus	46.07	45.6
PGSC0003DMT400025895	Potato	nucleus	45.87	44.49
GSMUA_AchrUn_...	Banana	plastid	42.77	41.9
HORVU6Hr1G034070.2	Barley	plastid	41.53	40.44
TraesCS6A01G167800.1	Wheat	plastid	40.7	39.4
TraesCS6B01G195400.1	Wheat	plastid	40.08	39.35
TraesCS6D01G156700.3	Wheat	plastid	39.88	38.83
Zm00001d053687_P001	Maize	plastid	39.46	38.12
EES04686	Sorghum	plastid	38.84	37.75
Os02t0194000-01	Rice	nucleus	29.55	35.4
KRH64580	Soybean	nucleus	23.97	22.01
KRH53340	Soybean	nucleus	23.76	21.99
KRH53271	Soybean	nucleus	22.93	14.14
KRH64632	Soybean	nucleus	22.52	13.89
KRH17984	Soybean	nucleus	21.9	13.86
KRH16394	Soybean	nucleus	20.66	12.89
KRH24488	Soybean	nucleus	23.14	11.02
KRH29482	Soybean	nucleus	23.14	10.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100783679	MapMan:12.4.2.1	EMBL:ACUP02002142	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G014400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	UniProt:I1JSR1
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	EnsemblPlants:KRH60872	ProteinID:KRH60872	ProteinID:KRH60872.1
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI000233A389	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:1109419..1113197

Molecular Weight (calculated)

53792.3 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.492

Length

484 amino acids

Sequence
(BLAST)

001: MATAATEPLP STTETPPAPP PPKQPPPPAP QPPAAAAAAA VKPEAPLPDS KTSAEANVIV VPSYSRWFSW DSIDECEARH LPEFFESASK SPRVYKYYRN
101: SIVKYFRYNP TRKITFTDVR KTLVGDVGSI RRVFDFLETW GLINYHPSSS LTKPLKWDDK ETKSDSASNS TESSSAPVKE NTKRLCSGCK VVCTIACFAC
201: DKYDLTLCAR CYVRGNYRVG VNSSDFRRVE ISEETKTDWS EKEITNLLEA ISHYGDDWKR VSQHVPGRTE KECVAHFLKL PFANQFQHYQ QHPAVNGTDD
301: GCNLLKMVTN ADAESELDTV ASAEPSKRMR LTPLADASNP IMAQAAFLSA LAGSEVAQAA AQAALTTLSE VYKATKINYR AFPRNTLLQD AGITSNGGNT
401: SDSFQGSRLH ANIQLEKEEL DVEKAISEII EVQMKNIQDK LVHFEDLDLL MEKEGQQMEQ MKNMFFLDQL TLLFHKSSAP KTGE

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.