Factsheet for AT2G33610.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37705	Canola	plastid	68.66	70.15
Bra021864.1-P	Field mustard	plastid	68.44	69.93
CDY23721	Canola	plastid	68.44	69.93
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	50.96	48.58
KRH60872	Soybean	nucleus	47.97	46.49
KRH51554	Soybean	nucleus	47.55	45.42
Solyc04g082760.2.1	Tomato	nucleus	43.92	42.13
PGSC0003DMT400025895	Potato	nucleus	44.14	41.48
GSMUA_AchrUn_...	Banana	plastid	40.09	38.06
HORVU6Hr1G034070.2	Barley	plastid	39.02	36.82
EES04686	Sorghum	plastid	39.02	36.75
Zm00001d053687_P001	Maize	plastid	39.02	36.53
Os02t0194000-01	Rice	nucleus	31.34	36.39
TraesCS6D01G156700.3	Wheat	plastid	38.38	36.22
TraesCS6B01G195400.1	Wheat	plastid	37.74	35.9
TraesCS6A01G167800.1	Wheat	plastid	38.17	35.8
AT2G47620.1	Thale cress	nucleus	24.73	22.66
AT1G21700.1	Thale cress	nucleus	21.11	12.27
AT4G34430.4	Thale cress	nucleus	24.09	11.46

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:817927	UniProt:A0A178W079	ProteinID:AAB80676.1
ProteinID:AEC08859.1	ArrayExpress:AT2G33610	EnsemblPlantsGene:AT2G33610	RefSeq:AT2G33610	TAIR:AT2G33610	RefSeq:AT2G33610-TAIR-G
EnsemblPlants:AT2G33610.1	TAIR:AT2G33610.1	Symbol:ATSWI3B	Unigene:At.43725	EMBL:BT004085	EMBL:BT005094
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006338	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016514	GO:GO:0016569	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	RefSeq:NP_180919.2	ProteinID:OAP11494.1	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44
UniProt:Q84JG2	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI000000C271	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]

Coordinates

chr2:+:14228972..14231408

Molecular Weight (calculated)

52413.1 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.591

Length

469 amino acids

Sequence
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.