Factsheet for GSMUA_AchrUn_randomP05810_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P26270_001
GSMUA_Achr5P29000_001
GSMUA_Achr6P15180_001
GSMUA_Achr6P25400_001
GSMUA_Achr7P24000_001
GSMUA_Achr8P05700_001
GSMUA_Achr8P30120_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	GSMUA_Achr6P25400_001	AT1G21700.1	12140326
AT2G33610.1	GSMUA_Achr8P30120_001	AT1G21700.1	12140326
AT2G33610.1	GSMUA_Achr6P25400_001	AT1G21700.1	16845477
AT2G33610.1	GSMUA_Achr8P30120_001	AT1G21700.1	16845477
AT2G33610.1	GSMUA_Achr3P26270_001	AT1G72770.1	19033529
AT2G33610.1	GSMUA_Achr7P24000_001	AT1G72770.1	19033529
AT2G33610.1	GSMUA_Achr8P05700_001	AT1G72770.1	19033529
AT2G33610.1	GSMUA_AchrUn_...	AT2G33610.1	12140326
AT2G33610.1	GSMUA_AchrUn_...	AT2G33610.1	16845477
AT2G33610.1	GSMUA_Achr11P...	AT3G11410.1	19033529
AT2G33610.1	GSMUA_Achr5P29000_001	AT3G11410.1	19033529
AT2G33610.1	GSMUA_Achr6P15180_001	AT3G11410.1	19033529
AT2G33610.1	GSMUA_AchrUn_...	AT3G11410.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G156700.3	Wheat	plastid	46.36	46.08
TraesCS6A01G167800.1	Wheat	plastid	46.15	45.6
Zm00001d053687_P001	Maize	plastid	45.75	45.11
EES04686	Sorghum	plastid	45.34	44.98
HORVU6Hr1G034070.2	Barley	plastid	45.14	44.87
TraesCS6B01G195400.1	Wheat	plastid	44.53	44.62
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	43.93	44.11
Os02t0194000-01	Rice	nucleus	35.63	43.56
CDY23721	Canola	plastid	40.08	43.14
KRH60872	Soybean	nucleus	41.9	42.77
Bra021864.1-P	Field mustard	plastid	39.68	42.7
CDY37705	Canola	plastid	39.47	42.48
KRH51554	Soybean	nucleus	41.9	42.16
Solyc04g082760.2.1	Tomato	nucleus	39.88	40.29
AT2G33610.1	Thale cress	nucleus	38.06	40.09
PGSC0003DMT400025895	Potato	nucleus	40.28	39.88
GSMUA_Achr9P16230_001	Banana	nucleus	28.95	24.78
GSMUA_Achr6P25400_001	Banana	nucleus	23.68	14.92
GSMUA_Achr8P30120_001	Banana	nucleus	23.48	14.85
GSMUA_Achr3P30500_001	Banana	nucleus	24.9	12.97
GSMUA_Achr7P26780_001	Banana	nucleus	23.89	12.88

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSMUA_AchrUn_randomG05810_001	EnsemblPlants:GSMUA_AchrUn_randomP05810_001	EnsemblPlants:GSMUA_AchrUn_randomT05810_001	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M0U6P2	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000294FDA9	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative SWI/SNF complex subunit SWI3B [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05810_001]

Coordinates

chrchrUn_random:-:24394624..24410666

Molecular Weight (calculated)

54529.7 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.475

Length

494 amino acids

Sequence
(BLAST)

001: MASSSPPPAQ APVLSPPNPP RPQQLPQPLP VAAVKSEVPV AEPRDPPASV SSIPLEPSPA AVAASYTITI PSCSGWFSWD QIHDTERRVL SEFFDGKSAS
101: KNPGVYKYYR DSIIRRFRGN PSRKITFTDA RRGLVGDVGS IRRVFDFLEE WGLINYTPLA KPSAKKGEMG DDSEKKETPR RICSHCKSSC NMACFTTDKA
201: DIILCARCFV RGDYRPGLSS TDFKRVDITE ETKADWTDKE TIHLLEAILQ YGDDWKKVAE HVGTKSEIDC VARFIKLPFG EQFLGPEEVG EYGKPHQKND
301: KVVTVPEGEN VPEQSLSKRM RLTPLADASN PIMAQVAFLS AMVGSDVAKA VAQAAISSLH KVDIAGGISA SDDRLQSAAS NGAKEEEAVA ASNGQTSSDV
401: LNEAVAEAQS QLKKEEQDVE QYLSDVVQVQ MKEIQDKIVH FEELELLLEK ERLQLRHMKD LLFADQLAIM QHKMQLLSKG NEKGEKVKQT NHVP

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.