Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 80.37 | 77.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.0 | 67.49 |
| GSMUA_Achr3P32040_001 | Banana | cytosol, peroxisome, plastid | 31.68 | 59.9 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 57.85 | 59.73 |
| GSMUA_Achr11P... | Banana | cytosol | 37.43 | 56.52 |
| CDY18067 | Canola | cytosol | 8.64 | 55.93 |
| VIT_06s0004g05460.t01 | Wine grape | nucleus | 55.76 | 54.2 |
| GSMUA_Achr8P14370_001 | Banana | cytosol | 41.62 | 54.08 |
| AT2G29380.1 | Thale cress | nucleus | 50.52 | 53.31 |
| VIT_13s0019g02200.t01 | Wine grape | plastid | 55.76 | 53.25 |
| CDY67227 | Canola | cytosol | 51.57 | 53.1 |
| CDY67257 | Canola | nucleus | 51.31 | 52.83 |
| Bra018398.1-P | Field mustard | cytosol | 50.52 | 52.73 |
| CDY45436 | Canola | cytosol | 50.52 | 52.73 |
| CDY40181 | Canola | cytosol | 50.52 | 52.73 |
| Solyc05g052980.2.1 | Tomato | nucleus | 56.02 | 52.32 |
| Bra002038.1-P | Field mustard | nucleus | 51.83 | 52.11 |
| KRG97855 | Soybean | cytosol | 54.19 | 51.75 |
| GSMUA_Achr2P19990_001 | Banana | cytosol | 31.94 | 51.69 |
| Solyc03g096670.2.1 | Tomato | nucleus | 54.71 | 51.48 |
| KRH31027 | Soybean | cytosol | 53.66 | 51.12 |
| CDY06705 | Canola | nucleus | 52.09 | 51.03 |
| PGSC0003DMT400043146 | Potato | nucleus | 54.71 | 50.98 |
| PGSC0003DMT400069947 | Potato | cytosol | 55.5 | 50.72 |
| AT3G11410.1 | Thale cress | cytosol | 52.88 | 50.63 |
| KRH15068 | Soybean | cytosol | 52.62 | 50.25 |
| CDY01017 | Canola | nucleus | 51.31 | 49.87 |
| CDY08530 | Canola | nucleus | 51.05 | 49.62 |
| Bra034845.1-P | Field mustard | nucleus | 51.57 | 49.37 |
| KRH73067 | Soybean | cytosol | 52.36 | 49.14 |
| PGSC0003DMT400077989 | Potato | cytosol | 51.83 | 48.29 |
| Solyc06g076400.2.1 | Tomato | nucleus | 51.57 | 48.05 |
| Bra002594.1-P | Field mustard | plastid | 51.57 | 47.82 |
| AT5G59220.1 | Thale cress | nucleus | 51.57 | 47.7 |
| Bra015579.1-P | Field mustard | nucleus | 52.62 | 47.18 |
| KRH73525 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 13.09 | 47.17 |
| CDY10275 | Canola | nucleus | 52.62 | 46.74 |
| Bra031574.1-P | Field mustard | nucleus | 53.14 | 46.56 |
| CDX80307 | Canola | nucleus, plastid | 48.17 | 46.46 |
| CDY06259 | Canola | nucleus | 52.88 | 46.33 |
| CDY33008 | Canola | nucleus, plastid | 47.91 | 46.33 |
| AT1G07430.1 | Thale cress | nucleus | 52.62 | 45.48 |
| GSMUA_Achr8P04220_001 | Banana | cytosol, nucleus, peroxisome | 40.05 | 45.27 |
| GSMUA_Achr11P... | Banana | cytosol | 44.24 | 41.73 |
| GSMUA_Achr2P09370_001 | Banana | cytosol | 35.34 | 41.67 |
| Bra030455.1-P | Field mustard | cytosol | 17.02 | 40.88 |
| GSMUA_Achr10P... | Banana | plastid | 39.27 | 40.54 |
| GSMUA_Achr7P24000_001 | Banana | cytosol | 39.53 | 38.52 |
| GSMUA_Achr2P19980_001 | Banana | vacuole | 5.24 | 37.04 |
| CDY36606 | Canola | nucleus | 23.56 | 36.0 |
| GSMUA_Achr8P05700_001 | Banana | cytosol, peroxisome, plasma membrane | 38.48 | 33.72 |
| GSMUA_Achr3P26270_001 | Banana | cytosol, peroxisome, plastid | 37.7 | 29.03 |
| PGSC0003DMT400049695 | Potato | extracellular | 3.14 | 10.91 |
| GSMUA_Achr2P08890_001 | Banana | mitochondrion | 23.56 | 8.34 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004721 | GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr5G29000_001 | EnsemblPlants:GSMUA_Achr5P29000_001 | EnsemblPlants:GSMUA_Achr5T29000_001 | InterPro:IPR001932 | InterPro:IPR036457 | UniProt:M0T2M4 |
| PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | ScanProsite:PS01032 |
| PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF532 | SMART:SM00332 | SUPFAM:SSF81606 | UniParc:UPI0002964FB6 |
| SEG:seg | : | : | : | : | : |
Description
Probable protein phosphatase 2C 24 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29000_001]
Coordinates
chr5:-:28925309..28927155
Molecular Weight (calculated)
40550.9 Da
IEP (calculated)
5.120
GRAVY (calculated)
-0.296
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDICCGVVN CGAEAAAMRS AEPGSGGARR RRMEIRRLRF DAESEAPAVE DEPSGKRQRM DGGAAAGSAE KSGFGMAAVC GRRRDMEDAV SIRPDFVGGD
101: HRIPARHHFF GVFDGHGCSH VASLCKDRMH EVVAEEVETL APGAGTPSQA WRVAMERSFA RMDSEAVDGG GGGGRPSPDC RCELQPPRCE HVGSTAVVAV
201: IGPTRIVVAN CGDSRAVLCR NGAPIPISSD HKPDREDELQ RIEAIGGRVI YWDGARVLGV LAMSRAIGDS YLKPYVVSEP EVTVTEREEG DECLILASDG
301: LWDVVSNETA CGIARMCLRG GGDDEEEEGG GGGDSLCSDA AILLTKLALA RQSADNISVV VIDLRSKPKR RRTATATATT TW
101: HRIPARHHFF GVFDGHGCSH VASLCKDRMH EVVAEEVETL APGAGTPSQA WRVAMERSFA RMDSEAVDGG GGGGRPSPDC RCELQPPRCE HVGSTAVVAV
201: IGPTRIVVAN CGDSRAVLCR NGAPIPISSD HKPDREDELQ RIEAIGGRVI YWDGARVLGV LAMSRAIGDS YLKPYVVSEP EVTVTEREEG DECLILASDG
301: LWDVVSNETA CGIARMCLRG GGDDEEEEGG GGGDSLCSDA AILLTKLALA RQSADNISVV VIDLRSKPKR RRTATATATT TW
001: MAEICYEVVT DACPSSVYES TPAHSRRRPR FQTVMHEDWE KNCKRSKQEA LATRYSSIPR SSREDFSDQN VDVSSPRYGV SSVCGRRREM EDAVAIHPSF
101: SSPKNSEFPQ HYFGVYDGHG CSHVAARCRE RLHKLVQEEL SSDMEDEEEW KTTMERSFTR MDKEVVSWGD SVVTANCKCD LQTPACDSVG STAVVSVITP
201: DKIVVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELDRIE GAGGRVIYWD CPRVLGVLAM SRAIGDNYLK PYVSCEPEVT ITDRRDDDCL ILASDGLWDV
301: VSNETACSVA RMCLRGGGRR QDNEDPAISD KACTEASVLL TKLALARNSS DNVSVVVIDL RR
101: SSPKNSEFPQ HYFGVYDGHG CSHVAARCRE RLHKLVQEEL SSDMEDEEEW KTTMERSFTR MDKEVVSWGD SVVTANCKCD LQTPACDSVG STAVVSVITP
201: DKIVVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELDRIE GAGGRVIYWD CPRVLGVLAM SRAIGDNYLK PYVSCEPEVT ITDRRDDDCL ILASDGLWDV
301: VSNETACSVA RMCLRGGGRR QDNEDPAISD KACTEASVLL TKLALARNSS DNVSVVVIDL RR
Arabidopsis Description
HAI3HAI3 [Source:UniProtKB/TrEMBL;Acc:A0A178VWK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.