Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01017 | Canola | nucleus | 98.47 | 98.47 |
| Bra034845.1-P | Field mustard | nucleus | 95.67 | 94.24 |
| CDY67227 | Canola | cytosol | 82.7 | 87.6 |
| CDY67257 | Canola | nucleus | 82.44 | 87.33 |
| AT3G11410.1 | Thale cress | cytosol | 83.21 | 81.95 |
| CDY18067 | Canola | cytosol | 10.18 | 67.8 |
| Solyc05g052980.2.1 | Tomato | nucleus | 62.85 | 60.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.0 | 59.72 |
| PGSC0003DMT400069947 | Potato | cytosol | 63.1 | 59.33 |
| VIT_13s0019g02200.t01 | Wine grape | plastid | 59.54 | 58.5 |
| KXG35986 | Sorghum | cytosol, peroxisome, plastid | 29.26 | 56.65 |
| Solyc03g096670.2.1 | Tomato | nucleus | 58.27 | 56.4 |
| PGSC0003DMT400043146 | Potato | nucleus | 58.52 | 56.1 |
| CDY45436 | Canola | cytosol | 51.4 | 55.19 |
| CDY40181 | Canola | cytosol | 51.15 | 54.92 |
| KRH73525 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 14.5 | 53.77 |
| Zm00001d005609_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 47.33 | 53.14 |
| CDY06705 | Canola | nucleus | 52.16 | 52.56 |
| TraesCS5A01G183600.1 | Wheat | peroxisome | 46.56 | 52.44 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 48.85 | 51.89 |
| EER96576 | Sorghum | cytosol | 47.07 | 51.82 |
| TraesCS5D01G188600.1 | Wheat | peroxisome | 45.8 | 51.58 |
| Os09t0325700-01 | Rice | cytosol | 46.82 | 51.4 |
| TraesCS5B01G182000.1 | Wheat | peroxisome | 45.55 | 51.29 |
| Zm00001d020100_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 46.56 | 51.12 |
| GSMUA_Achr5P29000_001 | Banana | cytosol | 49.62 | 51.05 |
| GSMUA_Achr11P... | Banana | cytosol | 50.64 | 50.38 |
| CDY33008 | Canola | nucleus, plastid | 50.13 | 49.87 |
| CDX80307 | Canola | nucleus, plastid | 50.13 | 49.75 |
| TraesCS3D01G355900.1 | Wheat | plastid | 50.13 | 49.62 |
| TraesCS3A01G362200.1 | Wheat | nucleus, plastid | 49.36 | 49.62 |
| HORVU3Hr1G085930.3 | Barley | nucleus, plastid | 49.36 | 49.36 |
| HORVU4Hr1G060370.1 | Barley | nucleus | 50.13 | 49.25 |
| TraesCS4B01G210100.1 | Wheat | nucleus | 50.38 | 48.77 |
| Os03t0268600-01 | Rice | nucleus | 49.87 | 48.51 |
| EER92493 | Sorghum | nucleus | 49.36 | 48.38 |
| CDY10275 | Canola | nucleus | 52.93 | 48.37 |
| Zm00001d028574_P001 | Maize | nucleus | 48.6 | 48.23 |
| Os01t0846300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 50.64 | 48.07 |
| TraesCS4D01G210900.1 | Wheat | nucleus | 50.13 | 48.05 |
| EES01744 | Sorghum | plastid | 49.62 | 47.33 |
| Zm00001d042886_P001 | Maize | nucleus | 49.11 | 47.3 |
| Zm00001d012401_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.62 | 47.22 |
| TraesCS4A01G094300.1 | Wheat | nucleus | 48.6 | 46.7 |
| TraesCS3B01G394600.3 | Wheat | plastid | 49.87 | 45.79 |
| CDY06259 | Canola | nucleus | 50.64 | 45.64 |
| CDY50002 | Canola | cytosol | 18.83 | 43.27 |
| KXG22152 | Sorghum | nucleus | 48.6 | 41.16 |
| CDX83901 | Canola | cytosol | 34.61 | 38.86 |
| CDX96761 | Canola | cytosol | 34.35 | 38.57 |
| CDX92752 | Canola | cytosol | 38.17 | 36.59 |
| CDY42756 | Canola | cytosol | 38.17 | 36.32 |
| CDX94382 | Canola | cytosol | 38.68 | 36.19 |
| CDY50003 | Canola | nucleus | 37.66 | 36.1 |
| CDY38877 | Canola | cytosol | 36.64 | 35.47 |
| CDX89368 | Canola | cytosol | 38.42 | 35.45 |
| CDY14318 | Canola | nucleus | 37.91 | 35.31 |
| CDY36606 | Canola | nucleus | 22.39 | 35.2 |
| CDY38260 | Canola | cytosol | 36.9 | 34.36 |
| CDY54381 | Canola | cytosol, mitochondrion, plastid | 36.9 | 34.28 |
| CDY32620 | Canola | cytosol | 34.1 | 34.27 |
| CDX72943 | Canola | cytosol, peroxisome, plastid | 36.64 | 30.32 |
| CDX96432 | Canola | cytosol, peroxisome, plastid | 37.15 | 30.17 |
| CDY48313 | Canola | cytosol | 37.91 | 29.74 |
| CDY26234 | Canola | cytosol | 37.4 | 29.64 |
| CDY53715 | Canola | plasma membrane, vacuole | 21.88 | 8.31 |
| CDX93912 | Canola | plasma membrane, vacuole | 21.88 | 8.3 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:A0A078F275 | UniProt:A0A078F275 |
| EnsemblPlants:CDY08530 | ProteinID:CDY08530 | ProteinID:CDY08530.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004721 |
| GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00000310001 |
| InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf |
| InterPro:PPM-type_phosphatase_dom | ScanProsite:PS01032 | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF518 | SMART:SM00331 |
| SMART:SM00332 | SUPFAM:SSF81606 | UniParc:UPI0004EF2442 | SEG:seg | : | : |
Description
BnaA05g27660DBnaA05g27660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F275]
Coordinates
chrLK031986:+:591377..593074
Molecular Weight (calculated)
42722.4 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.406
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGICCGVVG ESEPTVTVDS STRASLRRRL DLLPSIKIVA PPLESSRKRQ KCETPSGNQD LESNVRSERN VEKKARSSPP VKNSNLIPSS ATEAESCFVS
101: DAPKIGTTSV CGRRRDMEDA VSVHHSLIHK NSENLHFYGV FDGHGCSHVA EKCRERLHEI VKRDVEAMAA GGEDEWKETM AKSFQKMDRE VSQRDSNGAA
201: SRSVKSSCRC ELQSPQCDAV GSTAVVSVVT PEKIVVSNCG DSRAVLCRNG VAIPLSSDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDDDE CLILASDGLW DVVTNETACG VARMCLQDSD TAHNACSDAS LLLTKLALAR QSSDNVSVVV VDLRKRRSNN QVS
101: DAPKIGTTSV CGRRRDMEDA VSVHHSLIHK NSENLHFYGV FDGHGCSHVA EKCRERLHEI VKRDVEAMAA GGEDEWKETM AKSFQKMDRE VSQRDSNGAA
201: SRSVKSSCRC ELQSPQCDAV GSTAVVSVVT PEKIVVSNCG DSRAVLCRNG VAIPLSSDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDDDE CLILASDGLW DVVTNETACG VARMCLQDSD TAHNACSDAS LLLTKLALAR QSSDNVSVVV VDLRKRRSNN QVS
001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS
Arabidopsis Description
PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.