Factsheet for Zm00001d028574_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 29344831

gfp PMID: 29344831 doi

YG Wang, FL Fu, HQ Yu, T Hu, YY Zhang, Y Tao, JK Zhu, Y Zhao, WC Li

Maize Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China., Maize Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China. aumdyms@sicau.edu.cn., Shanghai Center for Plant Stress Biology, and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China., Shanghai Center for Plant Stress Biology, and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China. zhaoyang@sibs.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010209_P001
Zm00001d010210_P001
Zm00001d011473_P003
Zm00001d012475_P001
Zm00001d016294_P001
Zm00001d018799_P001
Zm00001d028793_P001
Zm00001d030045_P001
Zm00001d038252_P001
Zm00001d038436_P001
Zm00001d038949_P001
Zm00001d042829_P001
Zm00001d043014_P001
Zm00001d044056_P003
Zm00001d047037_P001
Zm00001d047705_P001
Zm00001d053687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	Zm00001d018799_P001	AT1G30270.1	17898163
AT1G07430.1	Zm00001d011473_P003	AT2G26650.1	17898163
AT1G07430.1	Zm00001d044056_P003	AT2G26650.1	17898163
AT1G07430.1	Zm00001d038949_P001	AT3G06610.1	21798944
AT1G07430.1	Zm00001d042829_P001	AT3G06610.1	21798944
AT3G11410.1	Zm00001d016294_P001	AT1G73000.1	19407142
AT3G11410.1	Zm00001d016294_P001	AT2G26040.1	19407142
AT3G11410.1	Zm00001d053687_P001	AT2G33610.1	19033529
AT3G11410.1	Zm00001d012475_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d028793_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d038436_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d043014_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d047705_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d030045_P001	AT4G17870.1	19407142
AT3G11410.1	Zm00001d047037_P001	AT4G17870.1	19407142
AT3G11410.1	Zm00001d010209_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d010210_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d038252_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d010209_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d010210_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d038252_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d030045_P001	AT5G46790.1	19407142
AT3G11410.1	Zm00001d047037_P001	AT5G46790.1	19407142
AT5G59220.1	Zm00001d012475_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d028793_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d038436_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d043014_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d047705_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d030045_P001	AT4G17870.1	19407142
AT5G59220.1	Zm00001d047037_P001	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92493	Sorghum	nucleus	90.15	89.03
Os03t0268600-01	Rice	nucleus	77.53	75.99
HORVU4Hr1G060370.1	Barley	nucleus	76.01	75.25
TraesCS4B01G210100.1	Wheat	nucleus	76.01	74.14
TraesCS4A01G094300.1	Wheat	nucleus	76.52	74.08
TraesCS4D01G210900.1	Wheat	nucleus	76.01	73.41
GSMUA_AchrUn_...	Banana	cytosol	43.69	61.13
GSMUA_Achr6P15180_001	Banana	cytosol	54.55	58.38
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.26	58.0
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	50.0	55.31
Zm00001d042886_P001	Maize	nucleus	56.82	55.15
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	55.81	53.51
CDY18067	Canola	cytosol	7.83	52.54
KRH31027	Soybean	cytosol	52.02	51.37
CDY67257	Canola	nucleus	47.98	51.21
CDY67227	Canola	cytosol	47.73	50.94
AT2G29380.1	Thale cress	nucleus	46.46	50.83
KRG97855	Soybean	cytosol	51.26	50.75
Bra002038.1-P	Field mustard	nucleus	48.23	50.26
KRH15068	Soybean	cytosol	50.76	50.25
VIT_06s0004g05460.t01	Wine grape	nucleus	49.75	50.13
CDY45436	Canola	cytosol	46.21	50.0
Bra018398.1-P	Field mustard	cytosol	46.21	50.0
CDY40181	Canola	cytosol	46.21	50.0
VIT_13s0019g02200.t01	Wine grape	plastid	50.51	50.0
AT3G11410.1	Thale cress	cytosol	49.49	49.12
CDY01017	Canola	nucleus	48.74	49.11
KRH73067	Soybean	cytosol	50.0	48.65
CDY08530	Canola	nucleus	48.23	48.6
Bra002594.1-P	Field mustard	plastid	50.51	48.54
AT5G59220.1	Thale cress	nucleus	50.25	48.18
Solyc05g052980.2.1	Tomato	nucleus	49.75	48.17
Bra034845.1-P	Field mustard	nucleus	48.48	48.12
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	12.88	48.11
PGSC0003DMT400069947	Potato	cytosol	50.0	47.37
Solyc03g096670.2.1	Tomato	nucleus	48.48	47.29
CDY06705	Canola	nucleus	46.46	47.18
CDX80307	Canola	nucleus, plastid	46.72	46.72
PGSC0003DMT400043146	Potato	nucleus	48.23	46.59
CDY33008	Canola	nucleus, plastid	46.46	46.58
PGSC0003DMT400077989	Potato	cytosol	47.47	45.85
Solyc06g076400.2.1	Tomato	nucleus	46.46	44.88
CDY10275	Canola	nucleus	48.48	44.65
Bra015579.1-P	Field mustard	nucleus	47.98	44.6
Zm00001d009626_P001	Maize	nucleus	41.92	44.27
AT1G07430.1	Thale cress	nucleus	48.48	43.44
Bra031574.1-P	Field mustard	nucleus	47.47	43.12
CDY06259	Canola	nucleus	47.22	42.89
Zm00001d011495_P001	Maize	cytosol	42.17	42.39
Zm00001d044015_P001	Maize	cytosol	42.93	41.46
Zm00001d011132_P001	Maize	cytosol, nucleus	14.9	39.6
Bra030455.1-P	Field mustard	cytosol	15.4	38.36
Zm00001d038846_P001	Maize	cytosol, nucleus	35.61	38.11
CDY36606	Canola	nucleus	21.97	34.8
Zm00001d025055_P001	Maize	cytosol	39.9	34.05
Zm00001d009747_P001	Maize	cytosol	35.86	33.57
Zm00001d039163_P002	Maize	cytosol	35.61	32.87
Zm00001d011131_P001	Maize	cytosol	22.98	32.27
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	34.6	31.28
Zm00001d044301_P001	Maize	cytosol, nucleus	36.36	29.75
Zm00001d004357_P001	Maize	nucleus	38.89	28.31
Zm00001d007529_P001	Maize	nucleus	17.42	13.53
PGSC0003DMT400049695	Potato	extracellular	2.78	10.0
Zm00001d007528_P001	Maize	extracellular, vacuole	4.55	7.09
Zm00001d007533_P001	Maize	extracellular	0.25	0.94
Zm00001d007558_P001	Maize	cytosol	0.25	0.88
Zm00001d007554_P001	Maize	cytosol	0.51	0.83
Zm00001d007530_P001	Maize	cytosol	0.25	0.57
Zm00001d007532_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100192073	MapMan:18.4.24.2.1	UniProt:A0A075T3H0	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006470	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738
GO:GO:0009791	GO:GO:0009845	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	GO:GO:0090351	InterPro:IPR001932	InterPro:IPR036457	EMBL:KJ855122	ProteinID:ONL96464.1
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000221C52B
EnsemblPlantsGene:Zm00001d028574	EnsemblPlants:Zm00001d028574_P001	EnsemblPlants:Zm00001d028574_T001	SEG:seg	:	:

Description

Protein phosphatase 2C 37

Coordinates

chr1:-:39490113..39492146

Molecular Weight (calculated)

42035.3 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.358

Length

396 amino acids

Sequence
(BLAST)

001: MAEICCEAAA AAAGSDQKGE CAGSRAARRR RMEIRRLRVV AEEASAKRRR LEADEEDAVG GRAPRYGVTS VCGRRRDMED AVTARPEFIN GHHFFGVFDG
101: HGCSHVATSC GERMHQIVAE EATAAAGSSV SDETARWRGV MEKSYARMDA EAVVSRETAG PAPTCRCEMQ LPKCDHVGST AVVAVVGPRH LVVANCGDSR
201: AVLSSGGATI PLSADHKPDR PDELERIHAA GGRVIFWDGA RVFGMLAMSR AIGDSYLKPF VISDPEVLVV ERKDGEDEFL ILASDGLWDV VSNEVACKVV
301: RTCLRNRAPR GGRERSSPTS NLSPRQSSAS GGSSSSGDEE AGGPSGDGAG SESDGESAED RACAEAAILL TKLALARQSA DNVSVVVINL RRRPRS

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.