Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06705 | Canola | nucleus | 84.19 | 92.82 |
| CDY06259 | Canola | nucleus | 81.63 | 80.5 |
| AT1G07430.1 | Thale cress | nucleus | 80.47 | 78.28 |
| CDY36606 | Canola | nucleus | 38.84 | 66.8 |
| CDY18067 | Canola | cytosol | 9.07 | 66.1 |
| CDY40181 | Canola | cytosol | 55.35 | 65.03 |
| CDY45436 | Canola | cytosol | 55.12 | 64.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.93 | 62.19 |
| KXG35986 | Sorghum | cytosol, peroxisome, plastid | 28.14 | 59.61 |
| CDY67257 | Canola | nucleus | 48.37 | 56.06 |
| CDY67227 | Canola | cytosol | 48.37 | 56.06 |
| CDX80307 | Canola | nucleus, plastid | 51.16 | 55.56 |
| CDY33008 | Canola | nucleus, plastid | 50.93 | 55.44 |
| VIT_06s0004g05460.t01 | Wine grape | nucleus | 50.23 | 54.96 |
| Solyc06g076400.2.1 | Tomato | nucleus | 51.16 | 53.66 |
| TraesCS5A01G183600.1 | Wheat | peroxisome | 43.49 | 53.58 |
| TraesCS5B01G182000.1 | Wheat | peroxisome | 43.26 | 53.3 |
| CDY08530 | Canola | nucleus | 48.37 | 52.93 |
| Zm00001d005609_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.02 | 52.86 |
| Os09t0325700-01 | Rice | cytosol | 43.95 | 52.79 |
| TraesCS5D01G188600.1 | Wheat | peroxisome | 42.79 | 52.72 |
| EER96576 | Sorghum | cytosol | 43.72 | 52.66 |
| GSMUA_Achr5P29000_001 | Banana | cytosol | 46.74 | 52.62 |
| CDY01017 | Canola | nucleus | 47.91 | 52.42 |
| GSMUA_Achr11P... | Banana | cytosol | 47.91 | 52.15 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 44.65 | 51.89 |
| Zm00001d020100_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 42.33 | 50.84 |
| TraesCS3D01G355900.1 | Wheat | plastid | 46.05 | 49.87 |
| HORVU3Hr1G085930.3 | Barley | nucleus, plastid | 45.58 | 49.87 |
| TraesCS3A01G362200.1 | Wheat | nucleus, plastid | 45.12 | 49.62 |
| Os03t0268600-01 | Rice | nucleus | 46.28 | 49.26 |
| HORVU4Hr1G060370.1 | Barley | nucleus | 45.58 | 49.0 |
| Zm00001d028574_P001 | Maize | nucleus | 44.65 | 48.48 |
| Os01t0846300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 46.51 | 48.31 |
| Zm00001d042886_P001 | Maize | nucleus | 45.81 | 48.28 |
| TraesCS4B01G210100.1 | Wheat | nucleus | 45.58 | 48.28 |
| TraesCS4A01G094300.1 | Wheat | nucleus | 45.58 | 47.92 |
| TraesCS4D01G210900.1 | Wheat | nucleus | 45.58 | 47.8 |
| EER92493 | Sorghum | nucleus | 44.42 | 47.63 |
| Zm00001d012401_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 45.58 | 47.46 |
| EES01744 | Sorghum | plastid | 45.12 | 47.09 |
| TraesCS3B01G394600.3 | Wheat | plastid | 45.12 | 45.33 |
| CDY50002 | Canola | cytosol | 17.21 | 43.27 |
| KXG22152 | Sorghum | nucleus | 43.72 | 40.52 |
| CDX83901 | Canola | cytosol | 30.47 | 37.43 |
| CDY38877 | Canola | cytosol | 35.12 | 37.19 |
| CDX96761 | Canola | cytosol | 30.23 | 37.14 |
| CDY32620 | Canola | cytosol | 33.02 | 36.32 |
| CDY50003 | Canola | nucleus | 34.19 | 35.85 |
| CDX94382 | Canola | cytosol | 34.88 | 35.71 |
| CDY42756 | Canola | cytosol | 34.19 | 35.59 |
| CDX92752 | Canola | cytosol | 33.72 | 35.37 |
| CDX89368 | Canola | cytosol | 34.88 | 35.21 |
| CDY14318 | Canola | nucleus | 34.19 | 34.83 |
| CDY38260 | Canola | cytosol | 33.72 | 34.36 |
| CDY54381 | Canola | cytosol, mitochondrion, plastid | 33.72 | 34.28 |
| CDY48313 | Canola | cytosol | 34.88 | 29.94 |
| CDY26234 | Canola | cytosol | 33.95 | 29.44 |
| CDX96432 | Canola | cytosol, peroxisome, plastid | 33.02 | 29.34 |
| CDX72943 | Canola | cytosol, peroxisome, plastid | 32.33 | 29.26 |
| PGSC0003DMT400049695 | Potato | extracellular | 2.79 | 10.91 |
| CDY53715 | Canola | plasma membrane, vacuole | 18.84 | 7.83 |
| CDX93912 | Canola | plasma membrane, vacuole | 18.84 | 7.82 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:A0A078F6X0 | UniProt:A0A078F6X0 |
| EnsemblPlants:CDY10275 | ProteinID:CDY10275 | ProteinID:CDY10275.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004721 |
| GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00032103001 |
| InterPro:IPR001932 | InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf |
| InterPro:PPM-type_phosphatase_dom | ScanProsite:PS01032 | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF518 | SMART:SM00332 |
| SUPFAM:SSF81606 | UniParc:UPI0004EF04E3 | SEG:seg | : | : | : |
Description
BnaC05g05180DBnaC05g05180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6X0]
Coordinates
chrLK032001:-:867189..868657
Molecular Weight (calculated)
47970.8 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.571
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDICYEDEA SWSSRRRRIG VHRCRISPSE MHQTAAAAVE DKEVVYKRNK QEENDIVNCA SPPSRSSPDS EAGESVLLDV DVTRDDVDAG VIAVIPSKKT
101: VRETDPRPRY GAASVCGRRR DMEDAVAIHP SFVRKQTEFS RAKWHYFGVY DGHGCSHVAT RCKERLHEIV QEEALSEKKE EWRKMMERSF TRMDNEVVCW
201: GETVMSANCR CELQTPDCDA VGSTAVVSVV TPEKIIVANC GDSRAVLCRN GKPVPLSTDH KPDRPDELDR IQKAGGRVIY WDGPRVLGVL AMSRAIGDNY
301: LKPYVSSEPE VTVTDRTEED EFLILASDGL WDVVTNEAAC AMVHMYLSKR GGRGRRRETP ECIEGKDEEE KVVPVVGSKK SGKKGEIADK ACTEASVLLT
401: KLALAKHSSD NVSVVVVDLR RRKKRHVAGH
101: VRETDPRPRY GAASVCGRRR DMEDAVAIHP SFVRKQTEFS RAKWHYFGVY DGHGCSHVAT RCKERLHEIV QEEALSEKKE EWRKMMERSF TRMDNEVVCW
201: GETVMSANCR CELQTPDCDA VGSTAVVSVV TPEKIIVANC GDSRAVLCRN GKPVPLSTDH KPDRPDELDR IQKAGGRVIY WDGPRVLGVL AMSRAIGDNY
301: LKPYVSSEPE VTVTDRTEED EFLILASDGL WDVVTNEAAC AMVHMYLSKR GGRGRRRETP ECIEGKDEEE KVVPVVGSKK SGKKGEIADK ACTEASVLLT
401: KLALAKHSSD NVSVVVVDLR RRKKRHVAGH
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.