CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88529
EER92405
EER93155
EES03354
EES04686
EES06532
EES19575
EES19683
KXG22060
KXG22062
KXG22064
OQU87775
OQU88438
OQU92088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	OQU88438	AT1G30270.1	17898163
AT1G07430.1	EES03354	AT2G26650.1	17898163
AT1G07430.1	EER93155	AT3G06610.1	21798944
AT3G11410.1	EER88529	AT1G73000.1	19407142
AT3G11410.1	EES06532	AT1G73000.1	19407142
AT3G11410.1	EER88529	AT2G26040.1	19407142
AT3G11410.1	EES06532	AT2G26040.1	19407142
AT3G11410.1	EES04686	AT2G33610.1	19033529
AT3G11410.1	EER92405	AT2G38310.1	19407142
AT3G11410.1	EES19683	AT2G38310.1	19407142
AT3G11410.1	OQU87775	AT2G38310.1	19407142
AT3G11410.1	OQU92088	AT4G17870.1	19407142
AT3G11410.1	EES19575	AT4G22200.1	11181729
AT3G11410.1	KXG22060	AT4G22200.1	11181729
AT3G11410.1	KXG22062	AT4G22200.1	11181729
AT3G11410.1	KXG22064	AT4G22200.1	11181729
AT3G11410.1	EES19575	AT4G22200.1	12034902
AT3G11410.1	KXG22060	AT4G22200.1	12034902
AT3G11410.1	KXG22062	AT4G22200.1	12034902
AT3G11410.1	KXG22064	AT4G22200.1	12034902
AT3G11410.1	OQU92088	AT5G46790.1	19407142
AT5G59220.1	EER92405	AT2G38310.1	19407142
AT5G59220.1	EES19683	AT2G38310.1	19407142
AT5G59220.1	OQU87775	AT2G38310.1	19407142
AT5G59220.1	OQU92088	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35986	Sorghum	cytosol, peroxisome, plastid	50.98	89.66
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	85.99	87.71
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	84.31	84.08
TraesCS5D01G188600.1	Wheat	peroxisome	76.47	78.22
TraesCS5B01G182000.1	Wheat	peroxisome	76.47	78.22
TraesCS5A01G183600.1	Wheat	peroxisome	76.47	78.22
Os09t0325700-01	Rice	cytosol	76.19	75.98
GSMUA_AchrUn_...	Banana	cytosol	49.86	62.9
CDY18067	Canola	cytosol	9.24	55.93
GSMUA_Achr6P15180_001	Banana	cytosol	56.02	54.05
AT2G29380.1	Thale cress	nucleus	52.66	51.93
EES01744	Sorghum	plastid	59.1	51.21
Bra018398.1-P	Field mustard	cytosol	51.82	50.55
CDY40181	Canola	cytosol	51.54	50.27
CDY67257	Canola	nucleus	52.1	50.13
CDY67227	Canola	cytosol	52.1	50.13
CDY45436	Canola	cytosol	51.26	50.0
EER92493	Sorghum	nucleus	55.74	49.63
Bra002038.1-P	Field mustard	nucleus	52.1	48.95
VIT_06s0004g05460.t01	Wine grape	nucleus	53.78	48.85
VIT_13s0019g02200.t01	Wine grape	plastid	53.5	47.75
CDY06705	Canola	nucleus	52.1	47.69
AT3G11410.1	Thale cress	cytosol	52.94	47.37
CDY01017	Canola	nucleus	52.1	47.33
CDY08530	Canola	nucleus	51.82	47.07
Bra034845.1-P	Field mustard	nucleus	52.1	46.62
Bra002594.1-P	Field mustard	plastid	53.78	46.6
AT5G59220.1	Thale cress	nucleus	53.22	46.0
KRH31027	Soybean	cytosol	50.98	45.39
CDY33008	Canola	nucleus, plastid	50.14	45.32
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	13.45	45.28
KRG97855	Soybean	cytosol	50.7	45.25
KRH15068	Soybean	cytosol	50.42	45.0
Solyc05g052980.2.1	Tomato	nucleus	51.54	44.99
PGSC0003DMT400069947	Potato	cytosol	52.66	44.98
CDX80307	Canola	nucleus, plastid	49.86	44.95
OQU78453	Sorghum	nucleus	49.58	44.81
Solyc03g096670.2.1	Tomato	nucleus	50.42	44.34
PGSC0003DMT400077989	Potato	cytosol	50.7	44.15
KRH73067	Soybean	cytosol	50.14	43.98
CDY10275	Canola	nucleus	52.66	43.72
Bra015579.1-P	Field mustard	nucleus	51.82	43.43
Solyc06g076400.2.1	Tomato	nucleus	49.86	43.41
PGSC0003DMT400043146	Potato	nucleus	49.58	43.17
AT1G07430.1	Thale cress	nucleus	52.38	42.31
KXG22152	Sorghum	nucleus	54.9	42.24
Bra031574.1-P	Field mustard	nucleus	51.54	42.2
CDY06259	Canola	nucleus	51.26	41.97
Bra030455.1-P	Field mustard	cytosol	17.37	38.99
KXG22422	Sorghum	cytosol, nucleus, plastid	39.78	37.37
OQU87413	Sorghum	cytosol	38.66	36.03
KXG33023	Sorghum	nucleus	46.5	35.02
EES11811	Sorghum	plastid	47.06	34.36
KXG22681	Sorghum	cytosol	40.34	33.64
OQU90183	Sorghum	mitochondrion	25.49	32.04
CDY36606	Canola	nucleus	22.41	32.0
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	41.74	30.91
OQU86100	Sorghum	nucleus	19.33	17.29
KXG28797	Sorghum	golgi, plasma membrane, vacuole	24.37	8.15
PGSC0003DMT400049695	Potato	extracellular	2.24	7.27

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	EntrezGene:8054565	UniProt:C5X9V1
EnsemblPlants:EER96576	ProteinID:EER96576	ProteinID:EER96576.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932
InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF334	SMART:SM00331	SMART:SM00332
EnsemblPlantsGene:SORBI_3002G172000	SUPFAM:SSF81606	unigene:Sbi.6419	UniParc:UPI0001A83956	RefSeq:XP_002460055.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:54480172..54484180

Molecular Weight (calculated)

37510.2 Da

IEP (calculated)

7.048

GRAVY (calculated)

-0.158

Length

357 amino acids

Sequence
(BLAST)

001: MSMAQVCCDS AAAATAAAAQ VVGAEAEARA RARAERRRRA GEAAGRWRHA GAAAGGTPDA ATRKRSLEAG ELLVARKHGA ASVAGRRREM EDAVSVREAF
101: ALAEGSHGGR RDFYGVFDGH GCSHVAEACR DRMHELLAEE LAVAAAADDV SWTAAMERSF ARMDSEVMSA GGASGACGCD AHKCDHVGST AVVAVVEERR
201: VVVANCGDSR AVLCRGGDGA PPVPLSSDHK PDRPDELARI EAAGGRVIFW EGARVLGVLA MSRAIGDGYL KPYVSSVPEV TVTDRSDGDE CLILASDGLW
301: DVVSNEAACE VARACLRRGR AKWCAEAAAL LTKLALARRS SDNVSVVVVD LRRRNHH

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.