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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88529
EER92405
EES04686
EES04864
EES06532
EES17886
EES19683
KXG33203
KXG34371
KXG37877
OQU87775
OQU92088

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72770.1 EES04864 AT1G01360.1 19407142
AT1G72770.1 EES17886 AT1G01360.1 19407142
AT1G72770.1 EES04864 AT1G01360.1 19407143
AT1G72770.1 EES17886 AT1G01360.1 19407143
AT1G72770.1 EER88529 AT1G73000.1 19407142
AT1G72770.1 EES06532 AT1G73000.1 19407142
AT1G72770.1 EER88529 AT2G26040.1 19407142
AT1G72770.1 EES06532 AT2G26040.1 19407142
AT1G72770.1 KXG34371 AT2G30880.1 21798944
AT1G72770.1 KXG37877 AT2G30880.1 21798944
AT1G72770.1 EES04686 AT2G33610.1 19033529
AT1G72770.1 EER92405 AT2G38310.1 19407142
AT1G72770.1 EES19683 AT2G38310.1 19407142
AT1G72770.1 OQU87775 AT2G38310.1 19407142
AT1G72770.1 EER92405 AT2G38310.1 19624469
AT1G72770.1 EES19683 AT2G38310.1 19624469
AT1G72770.1 OQU87775 AT2G38310.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 19407142
AT1G72770.1 EES19683 AT2G40330.1 19407142
AT1G72770.1 OQU87775 AT2G40330.1 19407142
AT1G72770.1 EER92405 AT2G40330.1 19624469
AT1G72770.1 EES19683 AT2G40330.1 19624469
AT1G72770.1 OQU87775 AT2G40330.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 21847091
AT1G72770.1 EES19683 AT2G40330.1 21847091
AT1G72770.1 OQU87775 AT2G40330.1 21847091
AT1G72770.1 EES04864 AT4G01026.1 19407142
AT1G72770.1 EES17886 AT4G01026.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19624469
AT1G72770.1 OQU92088 AT4G17870.1 21847091
AT1G72770.1 EES04864 AT4G27920.1 19407142
AT1G72770.1 EES17886 AT4G27920.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19407142
AT1G72770.1 EES19683 AT5G05440.1 19407142
AT1G72770.1 OQU87775 AT5G05440.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19624469
AT1G72770.1 EES19683 AT5G05440.1 19624469
AT1G72770.1 OQU87775 AT5G05440.1 19624469
AT1G72770.1 EER92405 AT5G05440.1 21847091
AT1G72770.1 EES19683 AT5G05440.1 21847091
AT1G72770.1 OQU87775 AT5G05440.1 21847091
AT1G72770.1 OQU92088 AT5G46790.1 19407142
AT1G72770.1 KXG33203 AT5G66400.1 19033529
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039163_P002 Maize cytosol 91.82 91.61
Zm00001d009747_P001 Maize cytosol 87.85 88.89
Os05t0592800-02 Rice endoplasmic reticulum, vacuole 74.77 71.91
TraesCS1D01G449700.1 Wheat cytosol 68.22 71.22
TraesCS1A01G441200.1 Wheat cytosol 68.46 71.12
PGSC0003DMT400021210 Potato cytosol, nucleus, peroxisome 14.72 70.0
HORVU1Hr1G094840.9 Barley extracellular, mitochondrion 67.76 69.38
Solyc08g062640.2.1 Tomato cytosol 21.03 67.16
TraesCS1B01G475700.1 Wheat cytosol 67.29 64.72
EES00964 Sorghum peroxisome, plasma membrane, vacuole 68.46 60.79
GSMUA_Achr7P24000_001 Banana cytosol 53.5 58.42
GSMUA_Achr8P05700_001 Banana cytosol, peroxisome, plasma membrane 58.18 57.11
KXG22422 Sorghum cytosol, nucleus, plastid 47.66 53.68
CDX96761 Canola cytosol 42.76 52.29
OQU87413 Sorghum cytosol 46.03 51.44
CDX83901 Canola cytosol 41.36 50.57
Bra016595.1-P Field mustard cytosol 48.36 50.49
GSMUA_Achr3P26270_001 Banana cytosol, peroxisome, plastid 56.54 48.79
KXG35986 Sorghum cytosol, peroxisome, plastid 21.96 46.31
Solyc12g096020.1.1 Tomato cytosol, nucleus, plastid 54.91 46.26
CDX72943 Canola cytosol, peroxisome, plastid 49.3 44.42
PGSC0003DMT400075333 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 55.37 44.22
CDX96432 Canola cytosol, peroxisome, plastid 49.3 43.59
Bra016034.1-P Field mustard cytosol, peroxisome, plastid 49.3 43.59
KRH61549 Soybean cytosol 55.37 43.57
KRH52222 Soybean cytosol 54.91 43.2
VIT_04s0008g01420.t01 Wine grape cytosol 55.14 42.83
CDY26234 Canola cytosol 49.53 42.74
CDY48313 Canola cytosol 48.83 41.72
KRH15739 Soybean cytosol 54.21 41.65
Bra025964.1-P Field mustard cytosol 49.3 41.54
KRH05300 Soybean cytosol 53.97 41.4
AT1G72770.1 Thale cress cytosol 49.07 41.1
AT1G17550.1 Thale cress cytosol 49.07 41.1
VIT_09s0002g01850.t01 Wine grape cytosol, peroxisome, plastid 52.1 40.69
EER96576 Sorghum cytosol 33.64 40.34
PGSC0003DMT400006608 Potato plastid 51.17 40.18
OQU78453 Sorghum nucleus 35.98 38.99
Solyc08g062650.2.1 Tomato extracellular 39.25 35.82
EER92493 Sorghum nucleus 32.94 35.16
EES01744 Sorghum plastid 33.64 34.95
KXG33023 Sorghum nucleus 33.88 30.59
KXG22152 Sorghum nucleus 32.94 30.39
EES11811 Sorghum plastid 33.41 29.24
OQU90183 Sorghum mitochondrion 15.65 23.59
OQU86100 Sorghum nucleus 14.49 15.54
KXG28797 Sorghum golgi, plasma membrane, vacuole 23.6 9.47
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10UniProt:A0A1B6PAM8
GO:GO:0003674GO:GO:0003824GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006464
GO:GO:0006470GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009414GO:GO:0009628GO:GO:0009719GO:GO:0009788GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0043169GO:GO:0046872GO:GO:0048364InterPro:IPR001932
InterPro:IPR036457EnsemblPlants:KXG22681ProteinID:KXG22681ProteinID:KXG22681.1PFAM:PF00481InterPro:PP2C
InterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832
PANTHER:PTHR13832:SF312SMART:SM00332EnsemblPlantsGene:SORBI_3009G255900SUPFAM:SSF81606UniParc:UPI00081ADADCSEG:seg
Description
hypothetical protein
Coordinates
chr9:-:58965676..58970129
Molecular Weight (calculated)
45487.5 Da
IEP (calculated)
4.983
GRAVY (calculated)
-0.136
Length
428 amino acids
Sequence
(BLAST)
001: MDDLTAGGLE LFAAVADFID DSAPPAAAMP PQQPEPDSAP GSPCSVASDC SSVATADFEG FADLGSALVL DDLVASASTS LPASGPRASA AAAPARSVFA
101: LDCVPRWGLE SVCGRRPEME DAARVLPTFF HVPLWMLAGD APVDGLDRAS FRLPTHFFGV YDGHGGLQVA NYCRERIHKV LAEELTKAQE AASDADLSAL
201: DPNNTHKHWE KAFVDCFSRV DAEVGGNAAT QGKPVAPDTV GSTAVAALVC SSHVIVANCG DSRAVLCRGK QPLTLSVDHK PNREDEYARI EAQGGKVINW
301: NGYRVLGVLA MSRSIGDRYL KPYVIPVPEV TIVARAKDDE CLIIASDGLW DVMSNEEVCD AARKRILLWH KKNADASSSA QRSGDSADEA AQAAAEYLSK
401: LALQKGSKDN ITVIVVDLKS HRKFKSRT
Best Arabidopsis Sequence Match ( AT1G17550.1 )
(BLAST)
001: MEEISPAVAL TLGLANTMCD SGISSTFDIS ELENVTDAAD MLCNQKRQRY SNGVVDCIMG SVSEEKTLSE VRSLSSDFSV TVQESEEDEP LVSDATIISE
101: GLIVVDARSE ISLPDTVETD NGRVLATAII LNETTIEQVP TAEVLIASLN HDVNMEVATS EVVIRLPEEN PNVARGSRSV YELECIPLWG TISICGGRSE
201: MEDAVRALPH FLKIPIKMLM GDHEGMSPSL PYLTSHFFGV YDGHGGAQVA DYCHDRIHSA LAEEIERIKE ELCRRNTGEG RQVQWEKVFV DCYLKVDDEV
301: KGKINRPVVG SSDRMVLEAV SPETVGSTAV VALVCSSHII VSNCGDSRAV LLRGKDSMPL SVDHKPDRED EYARIEKAGG KVIQWQGARV SGVLAMSRSI
401: GDQYLEPFVI PDPEVTFMPR AREDECLILA SDGLWDVMSN QEACDFARRR ILAWHKKNGA LPLAERGVGE DQACQAAAEY LSKLAIQMGS KDNISIIVID
501: LKAQRKFKTR S
Arabidopsis Description
HAB2Protein phosphatase 2C 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNP9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.