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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88444
EER92493
EER96576
EES00964
EES01744
KXG22152
KXG22422
KXG22681
KXG33895
KXG35986
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38310.1 EES00964 AT1G72770.1 19407142
AT2G38310.1 KXG22422 AT1G72770.1 19407142
AT2G38310.1 KXG22681 AT1G72770.1 19407142
AT2G38310.1 OQU87413 AT1G72770.1 19407142
AT2G38310.1 EES00964 AT1G72770.1 19624469
AT2G38310.1 KXG22422 AT1G72770.1 19624469
AT2G38310.1 KXG22681 AT1G72770.1 19624469
AT2G38310.1 OQU87413 AT1G72770.1 19624469
AT2G38310.1 EER92493 AT3G11410.1 19407142
AT2G38310.1 EER96576 AT3G11410.1 19407142
AT2G38310.1 EES01744 AT3G11410.1 19407142
AT2G38310.1 KXG22152 AT3G11410.1 19407142
AT2G38310.1 KXG35986 AT3G11410.1 19407142
AT2G38310.1 EER88444 AT4G18340.1 19407142
AT2G38310.1 EER92493 AT5G59220.1 19407142
AT2G38310.1 EER96576 AT5G59220.1 19407142
AT2G38310.1 EES01744 AT5G59220.1 19407142
AT2G38310.1 KXG22152 AT5G59220.1 19407142
AT2G38310.1 KXG35986 AT5G59220.1 19407142
AT2G40330.1 EES00964 AT1G72770.1 19407142
AT2G40330.1 KXG22422 AT1G72770.1 19407142
AT2G40330.1 KXG22681 AT1G72770.1 19407142
AT2G40330.1 OQU87413 AT1G72770.1 19407142
AT2G40330.1 EES00964 AT1G72770.1 19624469
AT2G40330.1 KXG22422 AT1G72770.1 19624469
AT2G40330.1 KXG22681 AT1G72770.1 19624469
AT2G40330.1 OQU87413 AT1G72770.1 19624469
AT2G40330.1 KXG33895 AT2G20000.1 17944809
AT5G05440.1 EES00964 AT1G72770.1 19407142
AT5G05440.1 KXG22422 AT1G72770.1 19407142
AT5G05440.1 KXG22681 AT1G72770.1 19407142
AT5G05440.1 OQU87413 AT1G72770.1 19407142
AT5G05440.1 EES00964 AT1G72770.1 19624469
AT5G05440.1 KXG22422 AT1G72770.1 19624469
AT5G05440.1 KXG22681 AT1G72770.1 19624469
AT5G05440.1 OQU87413 AT1G72770.1 19624469
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 92.79 93.64
Zm00001d047705_P001 Maize plastid 91.89 93.58
TraesCS4A01G114400.1 Wheat cytosol 71.62 88.83
Os03t0297600-01 Rice cytosol 86.49 83.84
HORVU4Hr1G055220.1 Barley cytosol 82.43 81.7
TraesCS4D01G191200.1 Wheat cytosol 81.98 81.25
TraesCS4B01G189800.1 Wheat cytosol 81.98 81.25
GSMUA_AchrUn_... Banana plastid 47.75 67.09
KRH00319 Soybean cytosol 53.15 66.67
GSMUA_Achr9P17980_001 Banana cytosol 44.14 65.77
EES19683 Sorghum plastid 63.96 65.74
GSMUA_Achr9P04600_001 Banana cytosol 42.34 65.73
KRH49452 Soybean plastid 52.7 65.73
GSMUA_Achr6P32790_001 Banana cytosol 59.46 62.56
Bra028758.1-P Field mustard cytosol 46.4 62.42
GSMUA_Achr8P21220_001 Banana cytosol 45.95 60.0
VIT_13s0067g01940.t01 Wine grape plastid 55.86 58.49
Bra017125.1-P Field mustard plastid 53.15 57.84
CDY18391 Canola plastid 53.15 57.84
CDY54415 Canola cytosol 53.15 57.84
CDX91449 Canola plastid 53.6 57.49
AT2G38310.1 Thale cress plastid 53.6 57.49
CDY07739 Canola plastid 53.15 57.0
Bra000052.1-P Field mustard plastid 53.15 57.0
KRH73249 Soybean plastid 53.15 56.73
CDY14471 Canola plastid 52.7 56.52
CDY54453 Canola plastid 52.7 56.25
KRH76014 Soybean cytosol 54.5 56.02
Solyc03g095780.1.1 Tomato plastid 50.45 55.72
Solyc10g085310.1.1 Tomato plastid 53.15 55.4
PGSC0003DMT400053120 Potato cytosol, plastid 50.0 55.22
PGSC0003DMT400053119 Potato cytosol, plastid 50.0 55.22
PGSC0003DMT400053102 Potato cytosol, plastid 50.0 55.22
Bra005115.1-P Field mustard plastid 36.94 55.03
Solyc05g052420.1.1 Tomato cytosol 20.27 54.88
VIT_08s0058g00470.t01 Wine grape plastid 55.86 54.63
GSMUA_Achr10P... Banana cytosol, plastid 48.65 54.55
PGSC0003DMT400028658 Potato nucleus 52.25 54.46
CDY04951 Canola cytosol 48.2 54.31
Solyc10g076410.1.1 Tomato plastid 49.55 54.19
CDX93191 Canola cytosol 49.55 54.19
Solyc09g015380.1.1 Tomato plastid 48.65 53.73
Bra017012.1-P Field mustard cytosol 49.55 53.66
CDY52923 Canola cytosol 49.55 53.66
PGSC0003DMT400041080 Potato mitochondrion 50.0 53.62
KRH14908 Soybean plastid 52.25 53.21
CDX98844 Canola cytosol 48.65 52.94
AT5G05440.1 Thale cress cytosol 48.2 52.71
Bra009113.1-P Field mustard cytosol 48.2 52.45
CDX70150 Canola cytosol 48.2 52.45
PGSC0003DMT400061535 Potato plastid 50.9 51.83
PGSC0003DMT400075056 Potato plastid 49.55 51.4
CDY72318 Canola cytosol 46.85 51.23
CDX80959 Canola cytosol 46.85 51.23
Bra005853.1-P Field mustard cytosol 46.85 51.23
EER88529 Sorghum cytosol 46.85 50.98
PGSC0003DMT400069734 Potato mitochondrion, plastid 47.75 50.96
CDX74796 Canola cytosol, nucleus, plastid 48.2 50.47
AT2G40330.1 Thale cress cytosol 48.2 49.77
Bra000184.1-P Field mustard cytosol, mitochondrion 47.3 49.53
CDY07608 Canola cytosol, mitochondrion 47.3 49.53
Bra004967.1-P Field mustard mitochondrion 47.3 49.53
CDY24911 Canola cytosol, mitochondrion 47.3 49.3
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 46.85 49.06
EES06532 Sorghum cytosol 45.05 49.02
OQU92088 Sorghum cytosol 42.34 44.34
KRH31193 Soybean cytosol, golgi, plastid 50.45 43.58
EES17886 Sorghum cytosol 38.29 43.15
Solyc06g050500.2.1 Tomato plastid 52.7 42.55
OQU87775 Sorghum endoplasmic reticulum, extracellular 51.35 41.91
EES04864 Sorghum cytosol 39.19 41.23
Protein Annotations
EnsemblPlants:EER92405EnsemblPlantsGene:SORBI_3001G403300EntrezGene:8081117Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sfPANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:EER92405ProteinID:EER92405.1
RefSeq:XP_002465407.1SEG:segSUPFAM:SSF55961unigene:Sbi.7841UniParc:UPI0001A82BA2UniProt:C5WNG0
MapMan:11.1.2.1.1.1:::::
Description
hypothetical protein
Coordinates
chr1:+:68842430..68843726
Molecular Weight (calculated)
22990.2 Da
IEP (calculated)
6.894
GRAVY (calculated)
0.044
Length
222 amino acids
Sequence
(BLAST)
001: MPCLQASSSP GSMPHQHHGR VLAGVGCAAE VAAAAVAATS PAAGMRCGAH DGEVPAEAAR HHEHAAPGPG RCCSAVVQHV AAPASAVWSV VRRFDQPQAY
101: KRFVRSCALL AGDGGVGTLR EVRVVSGLPA ASSRERLEVL DDESHVLSFR VVGGEHRLQN YLSVTTVHPS PAAPDAATVV VESYVVDVPP GNTPEDTRVF
201: VDTIVKCNLQ SLATTAEKLA AV
Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)
001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
Arabidopsis Description
PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.